Gene annotation
Transcriptome id Sobic.003G180400.1
Synonym ATPGP4, P-glycoprotein, MDR4, SbPGP4, ABCB4, Sb03g023740, PGP4
Functional annotation "domain confirmed by Pfam database, expressed in leaf, flower and root, expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920)
MDR-like ABC transporter, putative, expressed
UniProt A0A1B6Q455
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF239
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT2G47000 : ATP binding cassette subfamily B4
RAP-DB (Rice) LOC_Os01g35030.1 : MDR-like ABC transporter, putative, expressed
MaizeGDB (Corn) Zm00025a049436 , Zm00025a013659 , Zm00025a028841
Brachypodium PNT70939 , PNT70938 , PNT70937 , KQK05464 , KQK05466 , KQK05461 , KQK05462 , KQK05463 , KQK05465 , KQK09335 , PNT72654
Barley HORVU3Hr1G065390.36 , HORVU3Hr1G065390.45 , HORVU3Hr1G065390.44 , HORVU3Hr1G065390.41 , HORVU3Hr1G065390.40 , HORVU3Hr1G065390.43 , HORVU3Hr1G065390.42 , HORVU3Hr1G065390.5 , HORVU3Hr1G065390.6 , HORVU3Hr1G065390.7 , HORVU3Hr1G065390.1 , HORVU3Hr1G065390.3 , HORVU3Hr1G065390.8 , HORVU3Hr1G065390.29 , HORVU3Hr1G065390.28 , HORVU3Hr1G065390.27 , HORVU3Hr1G065390.26 , HORVU3Hr1G065390.24 , HORVU3Hr1G065390.23 , HORVU3Hr1G065390.21 , HORVU3Hr1G065390.20 , HORVU3Hr1G065390.38 , HORVU3Hr1G065390.39 , HORVU3Hr1G065390.34 , HORVU3Hr1G065390.35 , HORVU3Hr1G065390.37 , HORVU3Hr1G065390.30 , HORVU3Hr1G065390.31 , HORVU3Hr1G065390.32 , HORVU3Hr1G065390.33 , HORVU3Hr1G065390.16 , HORVU3Hr1G065390.17 , HORVU3Hr1G065390.14 , HORVU3Hr1G065390.15 , HORVU3Hr1G065390.12 , HORVU3Hr1G065390.13 , HORVU3Hr1G065390.11 , HORVU3Hr1G065390.18 , HORVU3Hr1G065390.19 , HORVU3Hr1G065390.22
Wheat TraesCS3D02G257500 , TraesCS3B02G401600 , TraesCS3B02G401600 , TraesCS3B02G401600 , TraesCS5A02G495900 , TraesCS3B02G290300 , TraesCS3B02G290300 , TraesCS3D02G362700 , TraesCS3A02G257500 , TraesCS3A02G257500 , TraesCS3A02G369700 , TraesCS3A02G369700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G232500 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.001G406700 expressed protein -
3 Sobic.009G170500 metal cation transporter, putative, expressed K14709: SLC39A1_2_3, solute carrier family 39 (zinc transporter), member 1/2/3
4 Sobic.006G144600 ARPC2B, putative, expressed K05758: actin related protein 2/3 complex, subunit 2
5 Sobic.001G399200 kinesin motor domain containing protein, expressed K10406: kinesin family member C2/C3
6 Sobic.001G431100 Plantacyanin(PubMedID : 23915383)@plastocyanin-like domain containing protein, putative, expressed -
7 Sobic.002G167600 2-aminoethanethiol dioxygenase, putative, expressed K10712: cysteamine dioxygenase
8 Sobic.003G387500 IQ calmodulin-binding motif domain containing protein, expressed -
9 Sobic.005G229100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@leaf senescence related protein, putative, expressed -
10 Sobic.003G231500 pectinesterase, putative, expressed K01051: pectinesterase
11 Sobic.009G084400 transporter family protein, putative, expressed -
12 Sobic.001G521600 Leucine-rich repeat family protein("PubMedID : 26759170,PubMedID : 24597475")@leucine-rich repeat family protein, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
13 Sobic.001G362100 nodulation protein-related, putative, expressed -
14 Sobic.009G246700 CAS1 domain-containing protein 1 precursor, putative, expressed -
15 Sobic.007G119500 expressed protein -
16 Sobic.001G460400 expressed protein -
17 Sobic.007G094100 OsWAK108 - OsWAK receptor-like protein kinase, expressed -
18 Sobic.006G226200 kinesin motor domain containing protein, putative, expressed K10405: kinesin family member C1
19 Sobic.010G269000 bZIP transcription factor domain containing protein, expressed -
20 Sobic.004G008600 receptor protein kinase CLAVATA1 precursor, putative, expressed -


Gene co-expression network
sample Sobic003G180400 Sobic003G180400 Sobic010G232500 Sobic010G232500 Sobic003G180400--Sobic010G232500 Sobic001G406700 Sobic001G406700 Sobic003G180400--Sobic001G406700 Sobic009G170500 Sobic009G170500 Sobic003G180400--Sobic009G170500 Sobic006G144600 Sobic006G144600 Sobic003G180400--Sobic006G144600 Sobic001G399200 Sobic001G399200 Sobic003G180400--Sobic001G399200 Sobic001G431100 Sobic001G431100 Sobic003G180400--Sobic001G431100 Sobic002G167600 Sobic002G167600 Sobic003G180400--Sobic002G167600 Sobic003G387500 Sobic003G387500 Sobic003G180400--Sobic003G387500 Sobic005G229100 Sobic005G229100 Sobic003G180400--Sobic005G229100 Sobic010G232500--Sobic006G144600 Sobic010G232500--Sobic001G406700 Sobic010G232500--Sobic005G229100 Sobic010G232500--Sobic003G387500 Sobic006G226200 Sobic006G226200 Sobic010G232500--Sobic006G226200 Sobic010G232500--Sobic002G167600 Sobic010G232500--Sobic001G399200 Sobic003G231500 Sobic003G231500 Sobic010G232500--Sobic003G231500 Sobic007G223600 Sobic007G223600 Sobic010G232500--Sobic007G223600 Sobic001G406700--Sobic003G387500 Sobic001G406700--Sobic006G144600 Sobic001G406700--Sobic001G399200 Sobic001G406700--Sobic009G170500 Sobic001G406700--Sobic010G232500 Sobic001G406700--Sobic002G167600 Sobic001G406700--Sobic005G229100 Sobic007G119500 Sobic007G119500 Sobic001G406700--Sobic007G119500 Sobic009G246700 Sobic009G246700 Sobic001G406700--Sobic009G246700 Sobic009G170500--Sobic001G406700 Sobic009G170500--Sobic002G167600 Sobic009G170500--Sobic007G119500 Sobic009G170500--Sobic006G144600 Sobic009G170500--Sobic003G387500 Sobic006G180300 Sobic006G180300 Sobic009G170500--Sobic006G180300 Sobic004G047600 Sobic004G047600 Sobic009G170500--Sobic004G047600 Sobic008G014700 Sobic008G014700 Sobic009G170500--Sobic008G014700 Sobic009G170500--Sobic010G232500 Sobic006G144600--Sobic001G406700 Sobic006G144600--Sobic010G232500 Sobic006G144600--Sobic003G387500 Sobic006G144600--Sobic002G167600 Sobic006G144600--Sobic009G170500 Sobic006G144600--Sobic001G399200 Sobic006G144600--Sobic005G229100 Sobic006G144600--Sobic007G119500 Sobic006G144600--Sobic007G223600 Sobic001G399200--Sobic001G406700 Sobic001G399200--Sobic006G144600 Sobic001G399200--Sobic010G232500 Sobic001G399200--Sobic003G387500 Sobic001G399200--Sobic005G229100 Sobic001G362100 Sobic001G362100 Sobic001G399200--Sobic001G362100 Sobic001G399200--Sobic007G223600 Sobic001G399200--Sobic006G226200 Sobic001G399200--Sobic009G170500 Sobic001G431100--Sobic010G232500 Sobic001G431100--Sobic003G180400 Sobic008G027700 Sobic008G027700 Sobic001G431100--Sobic008G027700 Sobic009G048000 Sobic009G048000 Sobic001G431100--Sobic009G048000 Sobic001G431100--Sobic002G167600 Sobic001G431100--Sobic006G144600 Sobic008G141200 Sobic008G141200 Sobic001G431100--Sobic008G141200 Sobic009G034300 Sobic009G034300 Sobic001G431100--Sobic009G034300 Sobic001G261400 Sobic001G261400 Sobic001G431100--Sobic001G261400 Sobic001G360700 Sobic001G360700 Sobic002G167600--Sobic001G360700 Sobic002G167600--Sobic006G144600 Sobic002G167600--Sobic004G047600 Sobic002G167600--Sobic001G406700 Sobic002G203900 Sobic002G203900 Sobic002G167600--Sobic002G203900 Sobic002G167600--Sobic009G170500 Sobic002G254900 Sobic002G254900 Sobic002G167600--Sobic002G254900 Sobic001G072600 Sobic001G072600 Sobic002G167600--Sobic001G072600 Sobic010G180100 Sobic010G180100 Sobic002G167600--Sobic010G180100 Sobic003G387500--Sobic001G406700 Sobic003G387500--Sobic006G144600 Sobic001G224300 Sobic001G224300 Sobic003G387500--Sobic001G224300 Sobic003G387500--Sobic010G232500 Sobic003G387500--Sobic002G167600 Sobic003G387500--Sobic009G170500 Sobic009G162700 Sobic009G162700 Sobic003G387500--Sobic009G162700 Sobic002G205500 Sobic002G205500 Sobic003G387500--Sobic002G205500 Sobic009G226900 Sobic009G226900 Sobic003G387500--Sobic009G226900 Sobic005G229100--Sobic007G223600 Sobic005G229100--Sobic010G232500 Sobic005G229100--Sobic002G205500 Sobic005G229100--Sobic006G144600 Sobic005G229100--Sobic001G406700 Sobic002G164600 Sobic002G164600 Sobic005G229100--Sobic002G164600 Sobic005G229100--Sobic006G226200 Sobic005G229100--Sobic003G387500 Sobic005G229100--Sobic001G399200
Octagon: transcription factors


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