Gene annotation
Transcriptome id Sobic.006G180100.1
Synonym Sb06g025470
Functional annotation SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence. (PubMedID : 27586543)
transmembrane amino acid transporter protein, putative, expressed
UniProt A0A1Z5REZ1
Pfam PF01490
Panther DB PTHR22950 PTHR22950:SF305
NCBI CDD KOG1304; Amino acid transporters
KEGG Orthology K14209; SLC36A, solute carrier family 36 (proton-coupled amino acid transporter)
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G38250 : Transmembrane amino acid transporter family protein
RAP-DB (Rice) LOC_Os04g47780.1 : transmembrane amino acid transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a021470 , Zm00025a056799
Brachypodium KQJ84070 , KQK00685
Barley HORVU6Hr1G064740.1 , HORVU6Hr1G064740.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G234800 inorganic phosphate transporter, putative, expressed K08176: MFS transporter, PHS family, inorganic phosphate transporter
2 Sobic.003G037500 WRKY107, expressed -
3 Sobic.003G285500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY14, expressed -
4 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
5 Sobic.002G367400 esterase, putative, expressed -
6 Sobic.003G265200 B3 DNA binding domain containing protein, expressed K09287: RAV-like factor
7 Sobic.003G192100 expressed protein -
8 Sobic.005G196800 membrane protein, putative, expressed -
9 Sobic.001G390300 OsCam1-1 - Calmodulin, expressed K02183: calmodulin
10 Sobic.002G302500 -(PubMedID : 29147737)@serine/threonine-protein kinase receptor precursor, putative, expressed -
11 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
12 Sobic.002G326100 aspartic proteinase nepenthesin-1 precursor, putative, expressed -
13 Sobic.006G206000 WRKY68, expressed -
14 Sobic.005G229700 GRAS family transcription factor domain containing protein, expressed -
15 Sobic.003G228200 cytochrome P450 72A1, putative, expressed -
16 Sobic.009G254900 uncharacterized protein PA4923, putative, expressed K06966: pyrimidine/purine-5'-nucleotide nucleosidase
17 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
18 Sobic.001G367600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
19 Sobic.001G536500 expressed protein -
20 Sobic.004G101300 expressed protein -


Gene co-expression network
sample Sobic006G180100 Sobic006G180100 Sobic001G234800 Sobic001G234800 Sobic006G180100--Sobic001G234800 Sobic003G037500 Sobic003G037500 Sobic006G180100--Sobic003G037500 Sobic003G285500 Sobic003G285500 Sobic006G180100--Sobic003G285500 Sobic002G353900 Sobic002G353900 Sobic006G180100--Sobic002G353900 Sobic002G367400 Sobic002G367400 Sobic006G180100--Sobic002G367400 Sobic003G265200 Sobic003G265200 Sobic006G180100--Sobic003G265200 Sobic003G192100 Sobic003G192100 Sobic006G180100--Sobic003G192100 Sobic005G196800 Sobic005G196800 Sobic006G180100--Sobic005G196800 Sobic001G390300 Sobic001G390300 Sobic006G180100--Sobic001G390300 Sobic002G302500 Sobic002G302500 Sobic001G234800--Sobic002G302500 Sobic006G206000 Sobic006G206000 Sobic001G234800--Sobic006G206000 Sobic001G234800--Sobic006G180100 Sobic001G234800--Sobic002G353900 Sobic009G065300 Sobic009G065300 Sobic001G234800--Sobic009G065300 Sobic009G221400 Sobic009G221400 Sobic001G234800--Sobic009G221400 Sobic010G166500 Sobic010G166500 Sobic001G234800--Sobic010G166500 Sobic002G338500 Sobic002G338500 Sobic001G234800--Sobic002G338500 Sobic002G327300 Sobic002G327300 Sobic001G234800--Sobic002G327300 Sobic003G037500--Sobic003G285500 Sobic003G037500--Sobic003G192100 Sobic001G367600 Sobic001G367600 Sobic003G037500--Sobic001G367600 Sobic001G231700 Sobic001G231700 Sobic003G037500--Sobic001G231700 Sobic004G245100 Sobic004G245100 Sobic003G037500--Sobic004G245100 Sobic003G037500--Sobic002G353900 Sobic003G228200 Sobic003G228200 Sobic003G037500--Sobic003G228200 Sobic007G155000 Sobic007G155000 Sobic003G037500--Sobic007G155000 Sobic001G304100 Sobic001G304100 Sobic003G037500--Sobic001G304100 Sobic003G285500--Sobic003G037500 Sobic003G285500--Sobic009G221400 Sobic003G285500--Sobic002G353900 Sobic003G285500--Sobic007G155000 Sobic003G041200 Sobic003G041200 Sobic003G285500--Sobic003G041200 Sobic003G285500--Sobic001G367600 Sobic003G285500--Sobic003G192100 Sobic004G101300 Sobic004G101300 Sobic003G285500--Sobic004G101300 Sobic003G285500--Sobic001G231700 Sobic002G055700 Sobic002G055700 Sobic002G353900--Sobic002G055700 Sobic003G382600 Sobic003G382600 Sobic002G353900--Sobic003G382600 Sobic002G353900--Sobic001G367600 Sobic002G353900--Sobic002G302500 Sobic002G192000 Sobic002G192000 Sobic002G353900--Sobic002G192000 Sobic002G353900--Sobic009G221400 Sobic009G139400 Sobic009G139400 Sobic002G353900--Sobic009G139400 Sobic006G158600 Sobic006G158600 Sobic002G353900--Sobic006G158600 Sobic009G234100 Sobic009G234100 Sobic002G353900--Sobic009G234100 Sobic004G237800 Sobic004G237800 Sobic002G367400--Sobic004G237800 Sobic002G367400--Sobic002G055700 Sobic002G017800 Sobic002G017800 Sobic002G367400--Sobic002G017800 Sobic001G466000 Sobic001G466000 Sobic002G367400--Sobic001G466000 Sobic002G367400--Sobic001G367600 Sobic003G043500 Sobic003G043500 Sobic002G367400--Sobic003G043500 Sobic009G111000 Sobic009G111000 Sobic002G367400--Sobic009G111000 Sobic001G046100 Sobic001G046100 Sobic002G367400--Sobic001G046100 Sobic004G321300 Sobic004G321300 Sobic002G367400--Sobic004G321300 Sobic006G157500 Sobic006G157500 Sobic003G265200--Sobic006G157500 Sobic003G260300 Sobic003G260300 Sobic003G265200--Sobic003G260300 Sobic002G328400 Sobic002G328400 Sobic003G265200--Sobic002G328400 Sobic001G431500 Sobic001G431500 Sobic003G265200--Sobic001G431500 Sobic002G336600 Sobic002G336600 Sobic003G265200--Sobic002G336600 Sobic001G259900 Sobic001G259900 Sobic003G265200--Sobic001G259900 Sobic009G184000 Sobic009G184000 Sobic003G265200--Sobic009G184000 Sobic003G228900 Sobic003G228900 Sobic003G265200--Sobic003G228900 Sobic003G043600 Sobic003G043600 Sobic003G265200--Sobic003G043600 Sobic005G018700 Sobic005G018700 Sobic003G192100--Sobic005G018700 Sobic003G192100--Sobic004G101300 Sobic003G192100--Sobic003G037500 Sobic003G192100--Sobic007G155000 Sobic002G245100 Sobic002G245100 Sobic003G192100--Sobic002G245100 Sobic003G192100--Sobic001G231700 Sobic001G050100 Sobic001G050100 Sobic003G192100--Sobic001G050100 Sobic003G192100--Sobic001G367600 Sobic004G340900 Sobic004G340900 Sobic003G192100--Sobic004G340900 Sobic001G247300 Sobic001G247300 Sobic005G196800--Sobic001G247300 Sobic005G196800--Sobic004G237800 Sobic005G196800--Sobic001G390300 Sobic005G196800--Sobic002G338500 Sobic005G196800--Sobic004G321300 Sobic006G183400 Sobic006G183400 Sobic005G196800--Sobic006G183400 Sobic005G196800--Sobic003G382600 Sobic005G196800--Sobic003G043600 Sobic005G196800--Sobic002G055700 Sobic003G125650 Sobic003G125650 Sobic001G390300--Sobic003G125650 Sobic001G390300--Sobic001G046100 Sobic001G055600 Sobic001G055600 Sobic001G390300--Sobic001G055600 Sobic001G402050 Sobic001G402050 Sobic001G390300--Sobic001G402050 Sobic001G374700 Sobic001G374700 Sobic001G390300--Sobic001G374700 Sobic001G493001 Sobic001G493001 Sobic001G390300--Sobic001G493001 Sobic001G390300--Sobic005G196800 Sobic002G375100 Sobic002G375100 Sobic001G390300--Sobic002G375100 Sobic001G390300--Sobic001G367600
Octagon: transcription factors


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