Gene annotation
Transcriptome id Sobic.006G215000.1
Synonym Sb06g028510, AGO2
Functional annotation PAZ domain-containing protein, putative, expressed
UniProt A0A1B6PN88
Pfam PF16488 PF08699 PF16486 PF02170 PF02171
Panther DB PTHR22891 PTHR22891:SF4
NCBI CDD -
KEGG Orthology K11593; ELF2C, eukaryotic translation initiation factor 2C
Gene Ontology GO:0005515; protein binding GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G31280 : Argonaute family protein
RAP-DB (Rice) LOC_Os04g52540.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a009792 , Zm00025a057031
Brachypodium KQJ84597
Barley HORVU2Hr1G098650.1 , HORVU2Hr1G098650.2 , HORVU2Hr1G098620.3 , HORVU2Hr1G098620.4
Wheat TraesCS2B02G439000 , TraesCS2B02G438600 , TraesCS2A02G419900 , TraesCS2A02G419900 , TraesCS2A02G419900 , TraesCS2D02G417000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G356300 cadmium tolerance factor, putative, expressed -
2 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
3 Sobic.001G382400 TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
4 Sobic.004G331900 transmembrane 9 superfamily member, putative, expressed -
5 Sobic.003G327600 domain of unknown function, DUF250 domain containing protein, expressed -
6 Sobic.004G229000 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
7 Sobic.001G205900 oxidoreductase, putative, expressed K00472: prolyl 4-hydroxylase
8 Sobic.001G500500 expressed protein -
9 Sobic.002G263000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein -
10 Sobic.006G162600 expressed protein -
11 Sobic.005G022300 - -
12 Sobic.003G424300 Pyrroline-5-carboxylate reductase(PubMedID : 24906815)@pyrroline-5-carboxylate reductase, putative, expressed K00286: pyrroline-5-carboxylate reductase
13 Sobic.004G352100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook motif domain containing protein, expressed -
14 Sobic.001G137400 ankyrin, putative, expressed -
15 Sobic.002G260700 ARF GTPase-activating domain-containing protein, putative, expressed K12489: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein
16 Sobic.003G005900 abscisic acid insensitive 8, putative, expressed -
17 Sobic.008G052000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@amidase family protein, putative, expressed -
18 Sobic.002G203500 protein binding protein, putative, expressed -
19 Sobic.003G410700 exostosin family domain containing protein, expressed -
20 Sobic.010G103500 ATMAP70 protein, putative, expressed -


Gene co-expression network
sample Sobic006G215000 Sobic006G215000 Sobic003G356300 Sobic003G356300 Sobic006G215000--Sobic003G356300 Sobic003G348200 Sobic003G348200 Sobic006G215000--Sobic003G348200 Sobic001G382400 Sobic001G382400 Sobic006G215000--Sobic001G382400 Sobic004G331900 Sobic004G331900 Sobic006G215000--Sobic004G331900 Sobic003G327600 Sobic003G327600 Sobic006G215000--Sobic003G327600 Sobic004G229000 Sobic004G229000 Sobic006G215000--Sobic004G229000 Sobic001G205900 Sobic001G205900 Sobic006G215000--Sobic001G205900 Sobic001G500500 Sobic001G500500 Sobic006G215000--Sobic001G500500 Sobic002G263000 Sobic002G263000 Sobic006G215000--Sobic002G263000 Sobic003G356300--Sobic006G215000 Sobic001G217300 Sobic001G217300 Sobic003G356300--Sobic001G217300 Sobic002G203500 Sobic002G203500 Sobic003G356300--Sobic002G203500 Sobic005G166100 Sobic005G166100 Sobic003G356300--Sobic005G166100 Sobic001G152600 Sobic001G152600 Sobic003G356300--Sobic001G152600 Sobic003G092500 Sobic003G092500 Sobic003G356300--Sobic003G092500 Sobic005G022300 Sobic005G022300 Sobic003G356300--Sobic005G022300 Sobic001G340900 Sobic001G340900 Sobic003G356300--Sobic001G340900 Sobic001G043500 Sobic001G043500 Sobic003G356300--Sobic001G043500 Sobic003G348200--Sobic004G331900 Sobic004G184000 Sobic004G184000 Sobic003G348200--Sobic004G184000 Sobic001G196100 Sobic001G196100 Sobic003G348200--Sobic001G196100 Sobic010G277000 Sobic010G277000 Sobic003G348200--Sobic010G277000 Sobic001G542900 Sobic001G542900 Sobic003G348200--Sobic001G542900 Sobic001G116000 Sobic001G116000 Sobic003G348200--Sobic001G116000 Sobic009G187600 Sobic009G187600 Sobic003G348200--Sobic009G187600 Sobic003G424300 Sobic003G424300 Sobic003G348200--Sobic003G424300 Sobic004G358900 Sobic004G358900 Sobic003G348200--Sobic004G358900 Sobic003G240100 Sobic003G240100 Sobic001G382400--Sobic003G240100 Sobic002G345800 Sobic002G345800 Sobic001G382400--Sobic002G345800 Sobic001G116600 Sobic001G116600 Sobic001G382400--Sobic001G116600 Sobic007G125700 Sobic007G125700 Sobic001G382400--Sobic007G125700 Sobic007G219200 Sobic007G219200 Sobic001G382400--Sobic007G219200 Sobic004G207000 Sobic004G207000 Sobic001G382400--Sobic004G207000 Sobic009G082600 Sobic009G082600 Sobic001G382400--Sobic009G082600 Sobic001G123100 Sobic001G123100 Sobic001G382400--Sobic001G123100 Sobic003G410700 Sobic003G410700 Sobic001G382400--Sobic003G410700 Sobic004G331900--Sobic003G348200 Sobic004G331900--Sobic003G327600 Sobic004G331900--Sobic003G424300 Sobic001G436100 Sobic001G436100 Sobic004G331900--Sobic001G436100 Sobic010G248000 Sobic010G248000 Sobic004G331900--Sobic010G248000 Sobic004G151200 Sobic004G151200 Sobic004G331900--Sobic004G151200 Sobic004G331900--Sobic004G358900 Sobic004G331900--Sobic001G116000 Sobic004G331900--Sobic004G184000 Sobic003G327600--Sobic004G331900 Sobic003G327600--Sobic003G348200 Sobic003G327600--Sobic004G151200 Sobic003G327600--Sobic003G424300 Sobic003G327600--Sobic010G248000 Sobic002G373600 Sobic002G373600 Sobic003G327600--Sobic002G373600 Sobic004G040700 Sobic004G040700 Sobic003G327600--Sobic004G040700 Sobic002G367800 Sobic002G367800 Sobic003G327600--Sobic002G367800 Sobic001G313301 Sobic001G313301 Sobic003G327600--Sobic001G313301 Sobic007G010200 Sobic007G010200 Sobic004G229000--Sobic007G010200 Sobic007G036800 Sobic007G036800 Sobic004G229000--Sobic007G036800 Sobic003G304800 Sobic003G304800 Sobic004G229000--Sobic003G304800 Sobic001G432100 Sobic001G432100 Sobic004G229000--Sobic001G432100 Sobic003G109200 Sobic003G109200 Sobic004G229000--Sobic003G109200 Sobic008G125000 Sobic008G125000 Sobic004G229000--Sobic008G125000 Sobic007G031100 Sobic007G031100 Sobic004G229000--Sobic007G031100 Sobic004G129500 Sobic004G129500 Sobic004G229000--Sobic004G129500 Sobic001G188700 Sobic001G188700 Sobic004G229000--Sobic001G188700 Sobic003G005900 Sobic003G005900 Sobic001G205900--Sobic003G005900 Sobic003G062400 Sobic003G062400 Sobic001G205900--Sobic003G062400 Sobic010G059700 Sobic010G059700 Sobic001G205900--Sobic010G059700 Sobic001G205900--Sobic004G358900 Sobic008G129600 Sobic008G129600 Sobic001G205900--Sobic008G129600 Sobic004G256300 Sobic004G256300 Sobic001G205900--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic001G205900--Sobic003G222700 Sobic002G297600 Sobic002G297600 Sobic001G205900--Sobic002G297600 Sobic001G205900--Sobic007G036800 Sobic001G137400 Sobic001G137400 Sobic001G500500--Sobic001G137400 Sobic001G288000 Sobic001G288000 Sobic001G500500--Sobic001G288000 Sobic008G098700 Sobic008G098700 Sobic001G500500--Sobic008G098700 Sobic010G243100 Sobic010G243100 Sobic001G500500--Sobic010G243100 Sobic003G289700 Sobic003G289700 Sobic001G500500--Sobic003G289700 Sobic006G215800 Sobic006G215800 Sobic001G500500--Sobic006G215800 Sobic002G374200 Sobic002G374200 Sobic001G500500--Sobic002G374200 Sobic002G299200 Sobic002G299200 Sobic001G500500--Sobic002G299200 Sobic004G313400 Sobic004G313400 Sobic001G500500--Sobic004G313400 Sobic001G086400 Sobic001G086400 Sobic002G263000--Sobic001G086400 Sobic001G171200 Sobic001G171200 Sobic002G263000--Sobic001G171200 Sobic002G121900 Sobic002G121900 Sobic002G263000--Sobic002G121900 Sobic002G263000--Sobic001G137400 Sobic004G220200 Sobic004G220200 Sobic002G263000--Sobic004G220200 Sobic010G194600 Sobic010G194600 Sobic002G263000--Sobic010G194600 Sobic003G091550 Sobic003G091550 Sobic002G263000--Sobic003G091550 Sobic003G022900 Sobic003G022900 Sobic002G263000--Sobic003G022900 Sobic009G219500 Sobic009G219500 Sobic002G263000--Sobic009G219500
Octagon: transcription factors


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