Gene annotation
Transcriptome id Sobic.006G227900.1,Sobic.006G227900.2
Synonym 4-Oct, AtOCT4, Sb06g029640
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
organic cation transporter protein, putative, expressed
UniProt C5YGM8
Pfam PF07690
Panther DB PTHR24064 PTHR24064:SF292
NCBI CDD KOG0255; Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily)
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT3G20660 : organic cation/carnitine transporter4
RAP-DB (Rice) LOC_Os04g53930.1 : organic cation transporter protein, putative, expressed
MaizeGDB (Corn) Zm00025a057107 , Zm00025a009679
Brachypodium PNT61908 , PNT61909 , PNT61907 , KQJ84796 , KQJ84797 , KQJ84795
Barley HORVU2Hr1G108380.1 , HORVU2Hr1G108380.2 , HORVU2Hr1G108380.3 , HORVU2Hr1G108380.4 , HORVU2Hr1G108380.5 , HORVU2Hr1G108340.1
Wheat TraesCS2A02G484000 , TraesCS2D02G483800 , TraesCS2A02G483700 , TraesCS2D02G483500 , TraesCS2D02G483600 , TraesCS2A02G483900 , TraesCS2B02G509700 , TraesCS2D02G483300 , TraesCS2B02G510000 , TraesCS2D02G483700 , TraesCS2A02G483500 , TraesCS2A02G483400
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G227900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.001G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
3 Sobic.001G050100 Cupin domain containing protein, expressed -
4 Sobic.008G059200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@amino acid transporter, putative, expressed -
5 Sobic.001G040200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@NAC domain-containing protein 67, putative, expressed -
6 Sobic.009G155200 ZOS5-08 - C2H2 zinc finger protein, expressed -
7 Sobic.006G228300 ethylene-responsive protein related, putative, expressed -
8 Sobic.007G171000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@monodehydroascorbate reductase, putative, expressed K08232: monodehydroascorbate reductase (NADH)
9 Sobic.002G245100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@pirin, putative, expressed K06911: quercetin 2,3-dioxygenase
10 Sobic.005G195301 - K02980: RP-S29e, small subunit ribosomal protein S29e
11 Sobic.010G268400 eukaryotic aspartyl protease domain containing protein, expressed -
12 Sobic.003G430400 OsCML31 - Calmodulin-related calcium sensor protein, expressed K13448: calcium-binding protein CML
13 Sobic.001G407800 leucoanthocyanidin dioxygenase, putative, expressed -
14 Sobic.009G149400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@aminotransferase, classes I and II, domain containing protein, expressed K15849: PAT, bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase
15 Sobic.002G202600 joka8, putative, expressed -
16 Sobic.003G192100 expressed protein -
17 Sobic.003G158500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
18 Sobic.001G107400 helix-loop-helix DNA-binding domain containing protein, expressed -
19 Sobic.004G187900 riboflavin biosynthesis protein ribAB, chloroplast precursor, putative, expressed K14652: 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II
20 Sobic.005G018700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic006G227900 Sobic006G227900 Sobic001G119000 Sobic001G119000 Sobic006G227900--Sobic001G119000 Sobic001G119100 Sobic001G119100 Sobic006G227900--Sobic001G119100 Sobic001G050100 Sobic001G050100 Sobic006G227900--Sobic001G050100 Sobic008G059200 Sobic008G059200 Sobic006G227900--Sobic008G059200 Sobic001G040200 Sobic001G040200 Sobic006G227900--Sobic001G040200 Sobic009G155200 Sobic009G155200 Sobic006G227900--Sobic009G155200 Sobic006G228300 Sobic006G228300 Sobic006G227900--Sobic006G228300 Sobic007G171000 Sobic007G171000 Sobic006G227900--Sobic007G171000 Sobic002G245100 Sobic002G245100 Sobic006G227900--Sobic002G245100 Sobic001G119000--Sobic001G119100 Sobic005G091500 Sobic005G091500 Sobic001G119000--Sobic005G091500 Sobic002G183200 Sobic002G183200 Sobic001G119000--Sobic002G183200 Sobic001G119000--Sobic002G245100 Sobic001G252300 Sobic001G252300 Sobic001G119000--Sobic001G252300 Sobic002G055600 Sobic002G055600 Sobic001G119000--Sobic002G055600 Sobic004G189400 Sobic004G189400 Sobic001G119000--Sobic004G189400 Sobic004G166700 Sobic004G166700 Sobic001G119000--Sobic004G166700 Sobic001G389000 Sobic001G389000 Sobic001G119000--Sobic001G389000 Sobic001G119100--Sobic001G119000 Sobic001G119100--Sobic002G183200 Sobic003G227300 Sobic003G227300 Sobic001G119100--Sobic003G227300 Sobic007G145600 Sobic007G145600 Sobic001G119100--Sobic007G145600 Sobic001G119100--Sobic005G091500 Sobic001G119100--Sobic004G189400 Sobic010G084400 Sobic010G084400 Sobic001G119100--Sobic010G084400 Sobic007G061300 Sobic007G061300 Sobic001G119100--Sobic007G061300 Sobic001G339700 Sobic001G339700 Sobic001G119100--Sobic001G339700 Sobic005G063100 Sobic005G063100 Sobic001G050100--Sobic005G063100 Sobic001G367600 Sobic001G367600 Sobic001G050100--Sobic001G367600 Sobic002G140400 Sobic002G140400 Sobic001G050100--Sobic002G140400 Sobic005G018700 Sobic005G018700 Sobic001G050100--Sobic005G018700 Sobic004G237800 Sobic004G237800 Sobic001G050100--Sobic004G237800 Sobic006G103000 Sobic006G103000 Sobic001G050100--Sobic006G103000 Sobic001G192200 Sobic001G192200 Sobic001G050100--Sobic001G192200 Sobic001G050100--Sobic005G091500 Sobic010G176600 Sobic010G176600 Sobic001G050100--Sobic010G176600 Sobic001G281400 Sobic001G281400 Sobic008G059200--Sobic001G281400 Sobic009G177800 Sobic009G177800 Sobic008G059200--Sobic009G177800 Sobic010G149300 Sobic010G149300 Sobic008G059200--Sobic010G149300 Sobic001G399100 Sobic001G399100 Sobic008G059200--Sobic001G399100 Sobic006G173900 Sobic006G173900 Sobic008G059200--Sobic006G173900 Sobic004G187900 Sobic004G187900 Sobic008G059200--Sobic004G187900 Sobic002G423300 Sobic002G423300 Sobic008G059200--Sobic002G423300 Sobic002G211900 Sobic002G211900 Sobic008G059200--Sobic002G211900 Sobic001G288800 Sobic001G288800 Sobic008G059200--Sobic001G288800 Sobic002G140300 Sobic002G140300 Sobic001G040200--Sobic002G140300 Sobic002G359300 Sobic002G359300 Sobic001G040200--Sobic002G359300 Sobic003G324400 Sobic003G324400 Sobic001G040200--Sobic003G324400 Sobic003G430400 Sobic003G430400 Sobic001G040200--Sobic003G430400 Sobic001G538866 Sobic001G538866 Sobic001G040200--Sobic001G538866 Sobic009G036100 Sobic009G036100 Sobic001G040200--Sobic009G036100 Sobic003G158500 Sobic003G158500 Sobic001G040200--Sobic003G158500 Sobic006G179500 Sobic006G179500 Sobic001G040200--Sobic006G179500 Sobic002G245800 Sobic002G245800 Sobic001G040200--Sobic002G245800 Sobic009G155200--Sobic007G171000 Sobic009G155200--Sobic001G119000 Sobic001G054400 Sobic001G054400 Sobic009G155200--Sobic001G054400 Sobic009G155200--Sobic002G359300 Sobic008G111100 Sobic008G111100 Sobic009G155200--Sobic008G111100 Sobic009G155200--Sobic009G177800 Sobic005G103300 Sobic005G103300 Sobic009G155200--Sobic005G103300 Sobic009G036700 Sobic009G036700 Sobic009G155200--Sobic009G036700 Sobic009G155200--Sobic001G040200 Sobic006G089300 Sobic006G089300 Sobic006G228300--Sobic006G089300 Sobic010G200700 Sobic010G200700 Sobic006G228300--Sobic010G200700 Sobic006G228300--Sobic006G179500 Sobic006G228300--Sobic001G040200 Sobic006G228300--Sobic001G538866 Sobic006G228300--Sobic002G140300 Sobic001G095300 Sobic001G095300 Sobic006G228300--Sobic001G095300 Sobic002G131800 Sobic002G131800 Sobic006G228300--Sobic002G131800 Sobic001G341600 Sobic001G341600 Sobic006G228300--Sobic001G341600 Sobic007G171000--Sobic009G155200 Sobic002G195900 Sobic002G195900 Sobic007G171000--Sobic002G195900 Sobic003G429300 Sobic003G429300 Sobic007G171000--Sobic003G429300 Sobic007G171000--Sobic001G119000 Sobic007G171000--Sobic009G177800 Sobic007G171000--Sobic002G359300 Sobic002G046100 Sobic002G046100 Sobic007G171000--Sobic002G046100 Sobic007G171000--Sobic008G111100 Sobic007G137700 Sobic007G137700 Sobic007G171000--Sobic007G137700 Sobic002G245100--Sobic005G018700 Sobic003G037800 Sobic003G037800 Sobic002G245100--Sobic003G037800 Sobic002G245100--Sobic004G237800 Sobic002G202600 Sobic002G202600 Sobic002G245100--Sobic002G202600 Sobic005G196800 Sobic005G196800 Sobic002G245100--Sobic005G196800 Sobic004G340900 Sobic004G340900 Sobic002G245100--Sobic004G340900 Sobic004G321300 Sobic004G321300 Sobic002G245100--Sobic004G321300 Sobic002G245100--Sobic003G158500 Sobic001G107400 Sobic001G107400 Sobic002G245100--Sobic001G107400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.