Gene annotation
Transcriptome id Sobic.006G234850.1
Synonym -
Functional annotation -
UniProt A0A1Z5RFQ6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G122800 expressed protein -
2 Sobic.001G259400 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
3 Sobic.004G064500 class I glutamine amidotransferase, putative, expressed -
4 Sobic.002G358300 expressed protein -
5 Sobic.004G191300 - -
6 Sobic.006G007900 SbOMT3 is involved in the biosynthesis of the allelochemical sorgoleone. Highly expressed in rrot hairs.(PubMedID : 17998204)@"Catalyse the A ringspecific 3,5-bis-O-methylation of resveratrol, yielding pterostilbene, preference for alkylresorcinolic-type substrates"(PubMedID : 21902799)@Produced pinostilbene as the major product besides a very small amount of pterostilbene from resveratrol in E.coli.(PubMedID : 24267561)@"Methylation activity in the A ring hydroxyl group against resveratrol as well as 3,5-dihydroxy-4'-methoxystilbene"(PubMedID : 25033820)@Catalytic activity for transferring one methyl group to the hydroxyl group at the 3- or 5-position in resveratrol in E.coli. Weak activity for methylation of both hydroxyl groups to generate pterostilbene in E.coli.(PubMedID : 25715927)@O-methyltransferase, putative, expressed -
7 Sobic.004G308900 AP2 domain containing protein, expressed -
8 Sobic.004G216300 - -
9 Sobic.001G363400 terpene synthase, putative, expressed K15803: (-)-germacrene D synthase
10 Sobic.003G415000 DUF567 domain containing protein, putative, expressed -
11 Sobic.005G067933 - -
12 Sobic.002G184300 heat shock protein DnaJ, putative, expressed -
13 Sobic.004G191400 - -
14 Sobic.005G086600 O-methyltransferase, putative, expressed -
15 Sobic.001G330400 ZOS3-11 - C2H2 zinc finger protein, expressed -
16 Sobic.001G195200 cytochrome P450, putative, expressed -
17 Sobic.003G142300 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
18 Sobic.003G268600 - -
19 Sobic.004G229500 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
20 Sobic.002G012500 DUF538 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G234850 Sobic006G234850 Sobic007G122800 Sobic007G122800 Sobic006G234850--Sobic007G122800 Sobic001G259400 Sobic001G259400 Sobic006G234850--Sobic001G259400 Sobic004G064500 Sobic004G064500 Sobic006G234850--Sobic004G064500 Sobic002G358300 Sobic002G358300 Sobic006G234850--Sobic002G358300 Sobic004G191300 Sobic004G191300 Sobic006G234850--Sobic004G191300 Sobic006G007900 Sobic006G007900 Sobic006G234850--Sobic006G007900 Sobic004G308900 Sobic004G308900 Sobic006G234850--Sobic004G308900 Sobic004G216300 Sobic004G216300 Sobic006G234850--Sobic004G216300 Sobic001G363400 Sobic001G363400 Sobic006G234850--Sobic001G363400 Sobic007G122800--Sobic002G358300 Sobic007G122800--Sobic004G308900 Sobic004G191400 Sobic004G191400 Sobic007G122800--Sobic004G191400 Sobic004G294400 Sobic004G294400 Sobic007G122800--Sobic004G294400 Sobic007G122800--Sobic004G191300 Sobic001G195200 Sobic001G195200 Sobic007G122800--Sobic001G195200 Sobic007G122800--Sobic006G007900 Sobic009G122400 Sobic009G122400 Sobic007G122800--Sobic009G122400 Sobic003G268600 Sobic003G268600 Sobic007G122800--Sobic003G268600 Sobic002G012500 Sobic002G012500 Sobic001G259400--Sobic002G012500 Sobic001G259400--Sobic006G007900 Sobic008G066401 Sobic008G066401 Sobic001G259400--Sobic008G066401 Sobic005G086600 Sobic005G086600 Sobic001G259400--Sobic005G086600 Sobic001G259400--Sobic004G064500 Sobic003G079200 Sobic003G079200 Sobic001G259400--Sobic003G079200 Sobic008G066200 Sobic008G066200 Sobic001G259400--Sobic008G066200 Sobic006G008000 Sobic006G008000 Sobic001G259400--Sobic006G008000 Sobic008G158600 Sobic008G158600 Sobic001G259400--Sobic008G158600 Sobic009G192600 Sobic009G192600 Sobic004G064500--Sobic009G192600 Sobic004G064500--Sobic001G259400 Sobic004G064500--Sobic007G122800 Sobic004G064500--Sobic005G086600 Sobic004G064500--Sobic003G268600 Sobic002G189100 Sobic002G189100 Sobic004G064500--Sobic002G189100 Sobic003G269000 Sobic003G269000 Sobic004G064500--Sobic003G269000 Sobic001G267600 Sobic001G267600 Sobic004G064500--Sobic001G267600 Sobic004G064500--Sobic006G007900 Sobic002G358300--Sobic004G308900 Sobic002G358300--Sobic007G122800 Sobic002G358300--Sobic001G195200 Sobic009G032000 Sobic009G032000 Sobic002G358300--Sobic009G032000 Sobic002G358300--Sobic004G191400 Sobic004G169200 Sobic004G169200 Sobic002G358300--Sobic004G169200 Sobic002G358300--Sobic004G191300 Sobic002G395300 Sobic002G395300 Sobic002G358300--Sobic002G395300 Sobic002G358300--Sobic004G294400 Sobic004G191300--Sobic004G191400 Sobic004G191300--Sobic009G122400 Sobic001G079300 Sobic001G079300 Sobic004G191300--Sobic001G079300 Sobic010G209200 Sobic010G209200 Sobic004G191300--Sobic010G209200 Sobic004G191300--Sobic007G122800 Sobic004G191300--Sobic004G294400 Sobic004G191300--Sobic004G308900 Sobic004G191300--Sobic002G358300 Sobic004G191300--Sobic001G195200 Sobic006G235100 Sobic006G235100 Sobic006G007900--Sobic006G235100 Sobic006G007900--Sobic001G259400 Sobic003G442100 Sobic003G442100 Sobic006G007900--Sobic003G442100 Sobic009G184000 Sobic009G184000 Sobic006G007900--Sobic009G184000 Sobic006G007900--Sobic007G122800 Sobic001G259900 Sobic001G259900 Sobic006G007900--Sobic001G259900 Sobic006G007900--Sobic008G066401 Sobic001G502400 Sobic001G502400 Sobic006G007900--Sobic001G502400 Sobic006G007900--Sobic005G086600 Sobic004G308900--Sobic002G358300 Sobic004G308900--Sobic007G122800 Sobic004G308900--Sobic001G195200 Sobic001G256700 Sobic001G256700 Sobic004G308900--Sobic001G256700 Sobic004G308900--Sobic004G191400 Sobic004G308900--Sobic009G032000 Sobic004G246600 Sobic004G246600 Sobic004G308900--Sobic004G246600 Sobic002G388900 Sobic002G388900 Sobic004G308900--Sobic002G388900 Sobic004G308900--Sobic004G191300 Sobic006G141700 Sobic006G141700 Sobic004G216300--Sobic006G141700 Sobic009G188000 Sobic009G188000 Sobic004G216300--Sobic009G188000 Sobic003G427800 Sobic003G427800 Sobic004G216300--Sobic003G427800 Sobic002G351300 Sobic002G351300 Sobic004G216300--Sobic002G351300 Sobic001G295200 Sobic001G295200 Sobic004G216300--Sobic001G295200 Sobic001G313600 Sobic001G313600 Sobic004G216300--Sobic001G313600 Sobic004G141100 Sobic004G141100 Sobic004G216300--Sobic004G141100 Sobic009G109000 Sobic009G109000 Sobic004G216300--Sobic009G109000 Sobic007G017500 Sobic007G017500 Sobic004G216300--Sobic007G017500 Sobic002G184300 Sobic002G184300 Sobic001G363400--Sobic002G184300 Sobic001G330200 Sobic001G330200 Sobic001G363400--Sobic001G330200 Sobic005G013500 Sobic005G013500 Sobic001G363400--Sobic005G013500 Sobic001G363400--Sobic009G032000 Sobic001G330100 Sobic001G330100 Sobic001G363400--Sobic001G330100 Sobic001G363400--Sobic002G358300 Sobic009G144700 Sobic009G144700 Sobic001G363400--Sobic009G144700 Sobic001G330400 Sobic001G330400 Sobic001G363400--Sobic001G330400 Sobic001G363400--Sobic004G246600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.