Gene annotation
Transcriptome id Sobic.007G036700.3
Synonym Sb07g003130, LDL2
Functional annotation amine oxidase, putative, expressed
UniProt C5YN37
Pfam PF13450 PF04433
Panther DB PTHR10742 PTHR10742:SF210
NCBI CDD KOG0029; Amine oxidase
KEGG Orthology K11450; KDM1A, AOF2, [histone H3]-N6,N6-dimethyl-L-lysine4 FAD-dependent demethylase
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G13682 : LSD1-like2
RAP-DB (Rice) LOC_Os08g04780.1 : amine oxidase, putative, expressed
MaizeGDB (Corn) Zm00025a055242
Brachypodium KQJ95042
Barley HORVU7Hr1G073020.4 , HORVU7Hr1G073020.6 , HORVU7Hr1G073020.1 , HORVU7Hr1G073020.3 , HORVU7Hr1G073020.2 , HORVU7Hr1G073020.5
Wheat TraesCS7B02G206700 , TraesCS7D02G303200 , TraesCS7A02G306400
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
2 Sobic.007G186300 ankyrin repeat domain containing protein, putative, expressed -
3 Sobic.009G171700 SAG20, putative, expressed -
4 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
5 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
6 Sobic.001G054200 green ripe-like, putative, expressed -
7 Sobic.003G115800 miro, putative, expressed K07953: GTP-binding protein SAR1
8 Sobic.002G256300 zinc finger, C3HC4 type domain containing protein, expressed -
9 Sobic.001G216200 transcription factor BTF3, putative, expressed K01527: EGD1, nascent polypeptide-associated complex subunit beta
10 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
11 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
12 Sobic.006G256500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
13 Sobic.005G176000 zinc finger family protein, putative, expressed -
14 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
15 Sobic.010G253800 expressed protein -
16 Sobic.009G232400 expressed protein -
17 Sobic.003G248600 26S protease regulatory subunit 7, putative, expressed K03061: PSMC2, 26S proteasome regulatory subunit T1
18 Sobic.001G078500 expressed protein -
19 Sobic.004G141700 expressed protein -
20 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''


Gene co-expression network
sample Sobic007G036700 Sobic007G036700 Sobic009G246950 Sobic009G246950 Sobic007G036700--Sobic009G246950 Sobic007G186300 Sobic007G186300 Sobic007G036700--Sobic007G186300 Sobic009G171700 Sobic009G171700 Sobic007G036700--Sobic009G171700 Sobic001G007200 Sobic001G007200 Sobic007G036700--Sobic001G007200 Sobic001G073000 Sobic001G073000 Sobic007G036700--Sobic001G073000 Sobic001G054200 Sobic001G054200 Sobic007G036700--Sobic001G054200 Sobic003G115800 Sobic003G115800 Sobic007G036700--Sobic003G115800 Sobic002G256300 Sobic002G256300 Sobic007G036700--Sobic002G256300 Sobic001G216200 Sobic001G216200 Sobic007G036700--Sobic001G216200 Sobic009G246950--Sobic002G256300 Sobic007G203700 Sobic007G203700 Sobic009G246950--Sobic007G203700 Sobic010G168600 Sobic010G168600 Sobic009G246950--Sobic010G168600 Sobic010G083700 Sobic010G083700 Sobic009G246950--Sobic010G083700 Sobic009G246950--Sobic001G054200 Sobic009G246950--Sobic007G186300 Sobic009G246950--Sobic009G171700 Sobic008G180900 Sobic008G180900 Sobic009G246950--Sobic008G180900 Sobic009G246950--Sobic001G007200 Sobic003G007500 Sobic003G007500 Sobic007G186300--Sobic003G007500 Sobic007G186300--Sobic001G054200 Sobic007G186300--Sobic003G115800 Sobic003G248600 Sobic003G248600 Sobic007G186300--Sobic003G248600 Sobic007G186300--Sobic001G007200 Sobic007G186300--Sobic009G246950 Sobic007G186300--Sobic010G083700 Sobic009G146100 Sobic009G146100 Sobic007G186300--Sobic009G146100 Sobic009G152200 Sobic009G152200 Sobic007G186300--Sobic009G152200 Sobic001G078500 Sobic001G078500 Sobic009G171700--Sobic001G078500 Sobic009G171700--Sobic010G168600 Sobic009G171700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic009G171700--Sobic004G293700 Sobic009G171700--Sobic010G083700 Sobic010G253800 Sobic010G253800 Sobic009G171700--Sobic010G253800 Sobic009G171700--Sobic008G180900 Sobic009G171700--Sobic007G186300 Sobic009G171700--Sobic002G256300 Sobic001G007200--Sobic010G083700 Sobic001G415500 Sobic001G415500 Sobic001G007200--Sobic001G415500 Sobic001G007200--Sobic007G186300 Sobic001G007200--Sobic010G253800 Sobic004G086600 Sobic004G086600 Sobic001G007200--Sobic004G086600 Sobic001G007200--Sobic001G073000 Sobic001G007200--Sobic009G246950 Sobic004G141700 Sobic004G141700 Sobic001G007200--Sobic004G141700 Sobic001G007200--Sobic009G146100 Sobic009G228800 Sobic009G228800 Sobic001G073000--Sobic009G228800 Sobic001G073000--Sobic010G083700 Sobic001G073000--Sobic001G007200 Sobic001G073000--Sobic001G415500 Sobic001G073000--Sobic007G186300 Sobic001G073000--Sobic001G054200 Sobic001G073000--Sobic009G246950 Sobic001G073000--Sobic010G253800 Sobic001G073000--Sobic003G248600 Sobic001G054200--Sobic010G083700 Sobic006G263900 Sobic006G263900 Sobic001G054200--Sobic006G263900 Sobic006G212100 Sobic006G212100 Sobic001G054200--Sobic006G212100 Sobic001G054200--Sobic007G186300 Sobic001G054200--Sobic004G293700 Sobic001G054200--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic001G054200--Sobic004G079100 Sobic006G232200 Sobic006G232200 Sobic001G054200--Sobic006G232200 Sobic001G054200--Sobic003G115800 Sobic003G115800--Sobic007G186300 Sobic004G300900 Sobic004G300900 Sobic003G115800--Sobic004G300900 Sobic003G220600 Sobic003G220600 Sobic003G115800--Sobic003G220600 Sobic002G078400 Sobic002G078400 Sobic003G115800--Sobic002G078400 Sobic010G204300 Sobic010G204300 Sobic003G115800--Sobic010G204300 Sobic003G115800--Sobic001G054200 Sobic002G202300 Sobic002G202300 Sobic003G115800--Sobic002G202300 Sobic003G115800--Sobic004G079100 Sobic003G115800--Sobic004G293700 Sobic002G256300--Sobic009G246950 Sobic002G256300--Sobic010G083700 Sobic004G104900 Sobic004G104900 Sobic002G256300--Sobic004G104900 Sobic002G256300--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G256300--Sobic001G136900 Sobic010G193800 Sobic010G193800 Sobic002G256300--Sobic010G193800 Sobic001G439600 Sobic001G439600 Sobic002G256300--Sobic001G439600 Sobic002G256300--Sobic006G263900 Sobic002G256300--Sobic009G171700 Sobic008G058300 Sobic008G058300 Sobic001G216200--Sobic008G058300 Sobic001G216200--Sobic007G186300 Sobic008G004000 Sobic008G004000 Sobic001G216200--Sobic008G004000 Sobic001G216200--Sobic003G248600 Sobic001G216200--Sobic004G300900 Sobic001G216200--Sobic001G415500 Sobic001G402300 Sobic001G402300 Sobic001G216200--Sobic001G402300 Sobic001G216200--Sobic001G054200 Sobic004G107600 Sobic004G107600 Sobic001G216200--Sobic004G107600
Octagon: transcription factors


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