Gene annotation
Transcriptome id Sobic.007G144000.1
Synonym Sb07g021910
Functional annotation RING-H2 finger protein, putative, expressed
UniProt C5YLP2
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF80
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT2G18650 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os08g34550.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a030703
Brachypodium KQK19432 , KQJ98490 , KQK23629 , KQK21365 , PNT68208 , PNT68209 , PNT68206 , PNT68207 , KQK19213
Barley HORVU4Hr1G055750.1 , HORVU4Hr1G055750.2 , HORVU4Hr1G080840.1 , HORVU0Hr1G040490.4 , HORVU0Hr1G040490.1 , HORVU0Hr1G040490.3 , HORVU0Hr1G040490.2 , HORVU7Hr1G036380.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G102200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
2 Sobic.002G186800 strictosidine synthase, putative, expressed -
3 Sobic.001G247700 3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
4 Sobic.007G049600 expressed protein -
5 Sobic.002G358100 expressed protein -
6 Sobic.002G360801 - -
7 Sobic.003G298700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
8 Sobic.004G357000 inactive receptor kinase At2g26730 precursor, putative, expressed -
9 Sobic.002G194500 glycosyl hydrolases family 16, putative, expressed K08235: xyloglucan:xyloglucosyl transferase
10 Sobic.003G083500 inactive receptor kinase At2g26730 precursor, putative, expressed -
11 Sobic.004G274600 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
12 Sobic.004G223100 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@response regulator receiver domain containing protein, expressed K14492: two-component response regulator ARR-A family
13 Sobic.003G113500 MFS18 protein precursor, putative, expressed -
14 Sobic.001G428300 strictosidine synthase, putative, expressed -
15 Sobic.003G140100 helix-loop-helix DNA-binding domain containing protein, expressed -
16 Sobic.002G157400 ankyrin, putative, expressed -
17 Sobic.007G115400 receptor-like protein kinase 5 precursor, putative, expressed -
18 Sobic.008G016500 rhamnogalacturonate lyase, putative, expressed K18195: RGL4, rhamnogalacturonan endolyase
19 Sobic.002G404300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
20 Sobic.001G221200 alcohol oxidase, putative, expressed K17756: long-chain-alcohol oxidase


Gene co-expression network
sample Sobic007G144000 Sobic007G144000 Sobic004G102200 Sobic004G102200 Sobic007G144000--Sobic004G102200 Sobic002G186800 Sobic002G186800 Sobic007G144000--Sobic002G186800 Sobic001G247700 Sobic001G247700 Sobic007G144000--Sobic001G247700 Sobic007G049600 Sobic007G049600 Sobic007G144000--Sobic007G049600 Sobic002G358100 Sobic002G358100 Sobic007G144000--Sobic002G358100 Sobic002G360801 Sobic002G360801 Sobic007G144000--Sobic002G360801 Sobic003G298700 Sobic003G298700 Sobic007G144000--Sobic003G298700 Sobic004G357000 Sobic004G357000 Sobic007G144000--Sobic004G357000 Sobic002G194500 Sobic002G194500 Sobic007G144000--Sobic002G194500 Sobic004G102200--Sobic003G298700 Sobic004G274600 Sobic004G274600 Sobic004G102200--Sobic004G274600 Sobic006G270500 Sobic006G270500 Sobic004G102200--Sobic006G270500 Sobic007G165800 Sobic007G165800 Sobic004G102200--Sobic007G165800 Sobic001G199400 Sobic001G199400 Sobic004G102200--Sobic001G199400 Sobic008G008100 Sobic008G008100 Sobic004G102200--Sobic008G008100 Sobic004G102200--Sobic002G186800 Sobic009G175100 Sobic009G175100 Sobic004G102200--Sobic009G175100 Sobic003G070600 Sobic003G070600 Sobic004G102200--Sobic003G070600 Sobic007G094200 Sobic007G094200 Sobic002G186800--Sobic007G094200 Sobic003G178500 Sobic003G178500 Sobic002G186800--Sobic003G178500 Sobic004G248100 Sobic004G248100 Sobic002G186800--Sobic004G248100 Sobic004G342000 Sobic004G342000 Sobic002G186800--Sobic004G342000 Sobic002G032500 Sobic002G032500 Sobic002G186800--Sobic002G032500 Sobic002G068400 Sobic002G068400 Sobic002G186800--Sobic002G068400 Sobic002G416400 Sobic002G416400 Sobic002G186800--Sobic002G416400 Sobic004G211700 Sobic004G211700 Sobic002G186800--Sobic004G211700 Sobic009G254500 Sobic009G254500 Sobic002G186800--Sobic009G254500 Sobic007G181100 Sobic007G181100 Sobic001G247700--Sobic007G181100 Sobic003G083500 Sobic003G083500 Sobic001G247700--Sobic003G083500 Sobic006G108100 Sobic006G108100 Sobic001G247700--Sobic006G108100 Sobic001G068800 Sobic001G068800 Sobic001G247700--Sobic001G068800 Sobic002G260600 Sobic002G260600 Sobic001G247700--Sobic002G260600 Sobic003G113500 Sobic003G113500 Sobic001G247700--Sobic003G113500 Sobic007G211200 Sobic007G211200 Sobic001G247700--Sobic007G211200 Sobic001G247700--Sobic004G357000 Sobic005G129600 Sobic005G129600 Sobic001G247700--Sobic005G129600 Sobic002G157400 Sobic002G157400 Sobic007G049600--Sobic002G157400 Sobic010G053500 Sobic010G053500 Sobic007G049600--Sobic010G053500 Sobic001G428300 Sobic001G428300 Sobic007G049600--Sobic001G428300 Sobic003G140100 Sobic003G140100 Sobic007G049600--Sobic003G140100 Sobic007G049600--Sobic002G360801 Sobic005G226600 Sobic005G226600 Sobic007G049600--Sobic005G226600 Sobic008G016500 Sobic008G016500 Sobic007G049600--Sobic008G016500 Sobic004G223100 Sobic004G223100 Sobic007G049600--Sobic004G223100 Sobic003G384200 Sobic003G384200 Sobic007G049600--Sobic003G384200 Sobic002G270900 Sobic002G270900 Sobic002G358100--Sobic002G270900 Sobic002G358100--Sobic007G144000 Sobic002G358100--Sobic004G102200 Sobic009G070500 Sobic009G070500 Sobic002G358100--Sobic009G070500 Sobic002G358100--Sobic007G165800 Sobic009G185900 Sobic009G185900 Sobic002G358100--Sobic009G185900 Sobic002G358100--Sobic003G298700 Sobic001G434100 Sobic001G434100 Sobic002G358100--Sobic001G434100 Sobic001G540200 Sobic001G540200 Sobic002G358100--Sobic001G540200 Sobic002G360801--Sobic007G049600 Sobic002G360801--Sobic010G053500 Sobic002G360801--Sobic002G157400 Sobic002G360801--Sobic003G140100 Sobic002G360801--Sobic001G428300 Sobic002G360801--Sobic005G226600 Sobic002G360801--Sobic008G016500 Sobic002G360801--Sobic004G223100 Sobic002G360801--Sobic003G384200 Sobic003G298700--Sobic004G102200 Sobic003G298700--Sobic004G274600 Sobic003G298700--Sobic004G211700 Sobic010G014700 Sobic010G014700 Sobic003G298700--Sobic010G014700 Sobic002G363300 Sobic002G363300 Sobic003G298700--Sobic002G363300 Sobic002G312300 Sobic002G312300 Sobic003G298700--Sobic002G312300 Sobic003G298700--Sobic006G270500 Sobic003G027100 Sobic003G027100 Sobic003G298700--Sobic003G027100 Sobic003G298700--Sobic008G008100 Sobic004G357000--Sobic007G211200 Sobic004G357000--Sobic003G113500 Sobic004G317200 Sobic004G317200 Sobic004G357000--Sobic004G317200 Sobic003G089300 Sobic003G089300 Sobic004G357000--Sobic003G089300 Sobic004G357000--Sobic004G248100 Sobic004G357000--Sobic002G032500 Sobic004G357000--Sobic005G129600 Sobic001G470200 Sobic001G470200 Sobic004G357000--Sobic001G470200 Sobic004G357000--Sobic004G211700 Sobic001G046400 Sobic001G046400 Sobic002G194500--Sobic001G046400 Sobic002G194500--Sobic004G342000 Sobic001G119200 Sobic001G119200 Sobic002G194500--Sobic001G119200 Sobic002G194500--Sobic007G211200 Sobic007G115400 Sobic007G115400 Sobic002G194500--Sobic007G115400 Sobic002G194500--Sobic003G113500 Sobic002G011000 Sobic002G011000 Sobic002G194500--Sobic002G011000 Sobic010G077700 Sobic010G077700 Sobic002G194500--Sobic010G077700 Sobic002G194500--Sobic002G186800
Octagon: transcription factors


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