Gene annotation
Transcriptome id Sobic.007G196201.1
Synonym -
Functional annotation -
UniProt A0A1Z5RBM3
Pfam PF13920
Panther DB PTHR12183 PTHR12183:SF17
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G25030 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os08g41520.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a039337 , Zm00025a005239 , Zm00025a026288 , Zm00025a047562
Brachypodium KQJ99087
Barley HORVU7Hr1G053470.4 , HORVU7Hr1G053470.5 , HORVU7Hr1G053470.6 , HORVU7Hr1G053470.7 , HORVU7Hr1G053470.3
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G038901 - -
2 Sobic.009G117800 Scarecrow-like 3(PubMedID : 26320239)@GRAS family transcription factor containing protein, expressed -
3 Sobic.002G018166 - -
4 Sobic.001G022000 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
5 Sobic.002G078600 LTPL169 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
6 Sobic.002G303950 - -
7 Sobic.003G391700 expressed protein -
8 Sobic.007G090418 - -
9 Sobic.010G111500 myb-like DNA-binding domain, SHAQKYF class family protein, expressed -
10 Sobic.004G133301 - -
11 Sobic.001G421200 protein phosphatase 2C, putative, expressed -
12 Sobic.001G349800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Phospholipase dalpha 1(PubMedID : 26320239)@phospholipase D, putative, expressed K01115: phospholipase D1/2
13 Sobic.002G384800 pentatricopeptide, putative, expressed -
14 Sobic.005G019900 expressed protein -
15 Sobic.005G190700 IQ calmodulin-binding and BAG domain containing protein, putative, expressed -
16 Sobic.009G196100 dof zinc finger domain containing protein, putative, expressed -
17 Sobic.008G019700 expressed protein -
18 Sobic.008G059566 - -
19 Sobic.001G393600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plant protein of unknown function domain containing protein, expressed -
20 Sobic.008G078966 - -


Gene co-expression network
sample Sobic007G196201 Sobic007G196201 Sobic003G038901 Sobic003G038901 Sobic007G196201--Sobic003G038901 Sobic009G117800 Sobic009G117800 Sobic007G196201--Sobic009G117800 Sobic002G018166 Sobic002G018166 Sobic007G196201--Sobic002G018166 Sobic001G022000 Sobic001G022000 Sobic007G196201--Sobic001G022000 Sobic002G078600 Sobic002G078600 Sobic007G196201--Sobic002G078600 Sobic002G303950 Sobic002G303950 Sobic007G196201--Sobic002G303950 Sobic003G391700 Sobic003G391700 Sobic007G196201--Sobic003G391700 Sobic007G090418 Sobic007G090418 Sobic007G196201--Sobic007G090418 Sobic010G111500 Sobic010G111500 Sobic007G196201--Sobic010G111500 Sobic003G038901--Sobic009G117800 Sobic003G038901--Sobic002G018166 Sobic001G421200 Sobic001G421200 Sobic003G038901--Sobic001G421200 Sobic003G038901--Sobic010G111500 Sobic003G038901--Sobic002G078600 Sobic003G038901--Sobic003G391700 Sobic003G038901--Sobic007G196201 Sobic003G038901--Sobic007G090418 Sobic008G059566 Sobic008G059566 Sobic003G038901--Sobic008G059566 Sobic009G117800--Sobic002G018166 Sobic009G117800--Sobic003G038901 Sobic009G117800--Sobic001G421200 Sobic004G139400 Sobic004G139400 Sobic009G117800--Sobic004G139400 Sobic009G082100 Sobic009G082100 Sobic009G117800--Sobic009G082100 Sobic009G117800--Sobic010G111500 Sobic003G027700 Sobic003G027700 Sobic009G117800--Sobic003G027700 Sobic009G117800--Sobic008G059566 Sobic006G082200 Sobic006G082200 Sobic009G117800--Sobic006G082200 Sobic002G018166--Sobic009G117800 Sobic002G018166--Sobic003G038901 Sobic002G018166--Sobic001G421200 Sobic002G018166--Sobic010G111500 Sobic002G018166--Sobic004G139400 Sobic002G018166--Sobic008G059566 Sobic008G073700 Sobic008G073700 Sobic002G018166--Sobic008G073700 Sobic002G018166--Sobic002G078600 Sobic002G018166--Sobic009G082100 Sobic001G022000--Sobic003G391700 Sobic008G024000 Sobic008G024000 Sobic001G022000--Sobic008G024000 Sobic001G022000--Sobic007G090418 Sobic002G237600 Sobic002G237600 Sobic001G022000--Sobic002G237600 Sobic006G163066 Sobic006G163066 Sobic001G022000--Sobic006G163066 Sobic003G326100 Sobic003G326100 Sobic001G022000--Sobic003G326100 Sobic008G078966 Sobic008G078966 Sobic001G022000--Sobic008G078966 Sobic002G067050 Sobic002G067050 Sobic001G022000--Sobic002G067050 Sobic001G022000--Sobic002G078600 Sobic002G078600--Sobic002G303950 Sobic002G078600--Sobic003G326100 Sobic009G196100 Sobic009G196100 Sobic002G078600--Sobic009G196100 Sobic001G060001 Sobic001G060001 Sobic002G078600--Sobic001G060001 Sobic002G078600--Sobic003G391700 Sobic002G078600--Sobic008G078966 Sobic002G078600--Sobic008G024000 Sobic010G146350 Sobic010G146350 Sobic002G078600--Sobic010G146350 Sobic005G207600 Sobic005G207600 Sobic002G078600--Sobic005G207600 Sobic002G303950--Sobic002G078600 Sobic002G303950--Sobic008G024000 Sobic002G303950--Sobic008G078966 Sobic002G303950--Sobic001G060001 Sobic002G303950--Sobic009G196100 Sobic002G303950--Sobic003G326100 Sobic002G303950--Sobic010G146350 Sobic002G303950--Sobic005G207600 Sobic002G063201 Sobic002G063201 Sobic002G303950--Sobic002G063201 Sobic003G391700--Sobic008G078966 Sobic003G391700--Sobic002G078600 Sobic003G391700--Sobic007G090418 Sobic003G391700--Sobic002G303950 Sobic005G207550 Sobic005G207550 Sobic003G391700--Sobic005G207550 Sobic001G190600 Sobic001G190600 Sobic003G391700--Sobic001G190600 Sobic001G138500 Sobic001G138500 Sobic003G391700--Sobic001G138500 Sobic003G391700--Sobic008G024000 Sobic004G122700 Sobic004G122700 Sobic003G391700--Sobic004G122700 Sobic007G090418--Sobic008G078966 Sobic008G045900 Sobic008G045900 Sobic007G090418--Sobic008G045900 Sobic009G258200 Sobic009G258200 Sobic007G090418--Sobic009G258200 Sobic009G142600 Sobic009G142600 Sobic007G090418--Sobic009G142600 Sobic001G234700 Sobic001G234700 Sobic007G090418--Sobic001G234700 Sobic010G111500--Sobic007G090418 Sobic010G111500--Sobic001G022000 Sobic010G111500--Sobic002G078600 Sobic010G111500--Sobic003G391700 Sobic002G352900 Sobic002G352900 Sobic010G111500--Sobic002G352900 Sobic010G111500--Sobic002G303950 Sobic010G111500--Sobic004G139400 Sobic010G111500--Sobic008G024000 Sobic010G111500--Sobic002G018166
Octagon: transcription factors


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