Gene annotation
Transcriptome id Sobic.008G073600.1,Sobic.008G073600.2
Synonym Sb08g006530, AL7
Functional annotation PHD finger protein, putative, expressed
UniProt C5YTM5
Pfam PF00628 PF12165
Panther DB PTHR12321 PTHR12321:SF62
NCBI CDD KOG1632; Uncharacterized PHD Zn-finger protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT2G02470 : alfin-like 6
RAP-DB (Rice) LOC_Os11g14010.1 : PHD finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a025625 , Zm00025a054457 , Zm00025a029547
Brachypodium KQJ91868 , KQJ91869 , KQJ91870
Barley HORVU2Hr1G031990.16 , HORVU2Hr1G031990.6 , HORVU2Hr1G031990.7 , HORVU2Hr1G031990.4 , HORVU2Hr1G031990.5 , HORVU2Hr1G031990.2 , HORVU2Hr1G031990.3 , HORVU2Hr1G031990.1 , HORVU2Hr1G031990.8 , HORVU2Hr1G031990.9 , HORVU2Hr1G031990.14 , HORVU2Hr1G031990.15 , HORVU2Hr1G031990.11 , HORVU2Hr1G031990.12 , HORVU2Hr1G031990.13 , HORVU4Hr1G015060.3
Wheat TraesCS4D02G085300 , TraesCS2D02G179400 , TraesCS2D02G179400 , TraesCS2B02G198500 , TraesCS2B02G198500 , TraesCS4B02G088200 , TraesCS4A02G227900 , TraesCS2A02G172100 , TraesCS2A02G172100
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G073600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G028800 OsFBX115 - F-box domain containing protein, expressed -
2 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
3 Sobic.004G356900 - K13025: EIF4A3, ATP-dependent RNA helicase
4 Sobic.001G031200 Methyltransferase small domain containing protein, expressed K02493: hemK, prmC, release factor glutamine methyltransferase
5 Sobic.003G226500 suppressor of G2 allele of SKP1, putative, expressed K12795: SUGT1, suppressor of G2 allele of SKP1
6 Sobic.001G512600 protein phosphatase 2C, putative, expressed -
7 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
8 Sobic.004G226800 expressed protein -
9 Sobic.006G252300 BSD domain-containing protein, putative, expressed -
10 Sobic.002G411300 expressed protein -
11 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
12 Sobic.010G091900 -(PubMedID : 26320239)@HVA22, putative, expressed -
13 Sobic.003G000800 RWP-RK domain-containing protein, putative, expressed -
14 Sobic.001G428400 - K12826: SF3A2, splicing factor 3A subunit 2
15 Sobic.004G348100 DNL zinc finger domain containing protein, putative, expressed K17808: ZIM17, DNLZ, mitochondrial protein import protein ZIM17
16 Sobic.004G301900 potyvirus VPg interacting protein, putative, expressed -
17 Sobic.009G246950 - K12898: heterogeneous nuclear ribonucleoprotein F/H
18 Sobic.002G087900 protein phosphatase inhibitor 2 containing protein, expressed K16833: PPP1R2, protein phosphatase inhibitor 2
19 Sobic.010G018700 H-BTB4 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
20 Sobic.003G250500 splicing factor U2AF, putative, expressed K12836: splicing factor U2AF 35 kDa subunit


Gene co-expression network
sample Sobic008G073600 Sobic008G073600 Sobic009G028800 Sobic009G028800 Sobic008G073600--Sobic009G028800 Sobic009G228800 Sobic009G228800 Sobic008G073600--Sobic009G228800 Sobic004G356900 Sobic004G356900 Sobic008G073600--Sobic004G356900 Sobic001G031200 Sobic001G031200 Sobic008G073600--Sobic001G031200 Sobic003G226500 Sobic003G226500 Sobic008G073600--Sobic003G226500 Sobic001G512600 Sobic001G512600 Sobic008G073600--Sobic001G512600 Sobic009G133400 Sobic009G133400 Sobic008G073600--Sobic009G133400 Sobic004G226800 Sobic004G226800 Sobic008G073600--Sobic004G226800 Sobic006G252300 Sobic006G252300 Sobic008G073600--Sobic006G252300 Sobic009G028800--Sobic001G031200 Sobic001G073000 Sobic001G073000 Sobic009G028800--Sobic001G073000 Sobic003G000800 Sobic003G000800 Sobic009G028800--Sobic003G000800 Sobic001G078500 Sobic001G078500 Sobic009G028800--Sobic001G078500 Sobic009G054700 Sobic009G054700 Sobic009G028800--Sobic009G054700 Sobic009G028800--Sobic009G133400 Sobic003G344900 Sobic003G344900 Sobic009G028800--Sobic003G344900 Sobic006G242300 Sobic006G242300 Sobic009G028800--Sobic006G242300 Sobic007G203700 Sobic007G203700 Sobic009G028800--Sobic007G203700 Sobic009G228800--Sobic001G073000 Sobic004G212200 Sobic004G212200 Sobic009G228800--Sobic004G212200 Sobic009G228800--Sobic007G203700 Sobic003G015900 Sobic003G015900 Sobic009G228800--Sobic003G015900 Sobic010G000900 Sobic010G000900 Sobic009G228800--Sobic010G000900 Sobic003G248600 Sobic003G248600 Sobic009G228800--Sobic003G248600 Sobic001G512300 Sobic001G512300 Sobic009G228800--Sobic001G512300 Sobic009G228800--Sobic004G356900 Sobic002G393500 Sobic002G393500 Sobic009G228800--Sobic002G393500 Sobic008G004400 Sobic008G004400 Sobic004G356900--Sobic008G004400 Sobic004G356900--Sobic004G226800 Sobic009G004600 Sobic009G004600 Sobic004G356900--Sobic009G004600 Sobic010G193800 Sobic010G193800 Sobic004G356900--Sobic010G193800 Sobic010G205300 Sobic010G205300 Sobic004G356900--Sobic010G205300 Sobic006G101700 Sobic006G101700 Sobic004G356900--Sobic006G101700 Sobic004G232800 Sobic004G232800 Sobic004G356900--Sobic004G232800 Sobic002G268400 Sobic002G268400 Sobic004G356900--Sobic002G268400 Sobic003G239800 Sobic003G239800 Sobic004G356900--Sobic003G239800 Sobic001G031200--Sobic009G054700 Sobic001G031200--Sobic009G028800 Sobic001G031200--Sobic003G000800 Sobic001G149700 Sobic001G149700 Sobic001G031200--Sobic001G149700 Sobic001G371300 Sobic001G371300 Sobic001G031200--Sobic001G371300 Sobic010G168600 Sobic010G168600 Sobic001G031200--Sobic010G168600 Sobic010G083700 Sobic010G083700 Sobic001G031200--Sobic010G083700 Sobic004G006300 Sobic004G006300 Sobic001G031200--Sobic004G006300 Sobic003G250500 Sobic003G250500 Sobic001G031200--Sobic003G250500 Sobic003G226500--Sobic003G250500 Sobic004G104900 Sobic004G104900 Sobic003G226500--Sobic004G104900 Sobic003G007500 Sobic003G007500 Sobic003G226500--Sobic003G007500 Sobic003G350600 Sobic003G350600 Sobic003G226500--Sobic003G350600 Sobic001G136900 Sobic001G136900 Sobic003G226500--Sobic001G136900 Sobic003G226500--Sobic010G083700 Sobic003G226500--Sobic004G226800 Sobic003G226500--Sobic001G512600 Sobic001G054200 Sobic001G054200 Sobic003G226500--Sobic001G054200 Sobic001G512600--Sobic003G350600 Sobic001G467000 Sobic001G467000 Sobic001G512600--Sobic001G467000 Sobic008G142700 Sobic008G142700 Sobic001G512600--Sobic008G142700 Sobic001G512600--Sobic003G250500 Sobic004G150400 Sobic004G150400 Sobic001G512600--Sobic004G150400 Sobic001G512600--Sobic003G226500 Sobic004G301900 Sobic004G301900 Sobic001G512600--Sobic004G301900 Sobic001G512600--Sobic003G000800 Sobic001G372000 Sobic001G372000 Sobic001G512600--Sobic001G372000 Sobic009G133400--Sobic004G356900 Sobic009G133400--Sobic006G242300 Sobic010G146600 Sobic010G146600 Sobic009G133400--Sobic010G146600 Sobic004G348100 Sobic004G348100 Sobic009G133400--Sobic004G348100 Sobic009G133400--Sobic004G301900 Sobic010G247400 Sobic010G247400 Sobic009G133400--Sobic010G247400 Sobic010G251100 Sobic010G251100 Sobic009G133400--Sobic010G251100 Sobic009G133400--Sobic001G512600 Sobic009G133400--Sobic007G203700 Sobic004G226800--Sobic004G356900 Sobic006G049700 Sobic006G049700 Sobic004G226800--Sobic006G049700 Sobic002G256300 Sobic002G256300 Sobic004G226800--Sobic002G256300 Sobic002G113900 Sobic002G113900 Sobic004G226800--Sobic002G113900 Sobic004G226800--Sobic010G193800 Sobic004G226800--Sobic003G226500 Sobic001G459100 Sobic001G459100 Sobic004G226800--Sobic001G459100 Sobic002G204000 Sobic002G204000 Sobic004G226800--Sobic002G204000 Sobic004G226800--Sobic004G232800 Sobic001G281600 Sobic001G281600 Sobic006G252300--Sobic001G281600 Sobic002G309800 Sobic002G309800 Sobic006G252300--Sobic002G309800 Sobic007G078500 Sobic007G078500 Sobic006G252300--Sobic007G078500 Sobic004G121100 Sobic004G121100 Sobic006G252300--Sobic004G121100 Sobic004G205600 Sobic004G205600 Sobic006G252300--Sobic004G205600 Sobic008G128600 Sobic008G128600 Sobic006G252300--Sobic008G128600 Sobic006G200600 Sobic006G200600 Sobic006G252300--Sobic006G200600 Sobic008G062000 Sobic008G062000 Sobic006G252300--Sobic008G062000 Sobic003G084700 Sobic003G084700 Sobic006G252300--Sobic003G084700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.