Gene annotation
Transcriptome id Sobic.008G109300.2,Sobic.008G109300.1,Sobic.008G109300.4,Sobic.008G109300.3
Synonym Sb08g016350
Functional annotation oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
UniProt A0A1B6PDE2 , A0A1B6PD43 , A0A1B6PCZ1 , A0A1B6PCW6
Pfam PF03171 PF14226 PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF220
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G10500 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os07g07410.2 : oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS3D02G437500 , TraesCS3D02G437500 , TraesCS6D02G000600 , TraesCS3B02G479500 , TraesCS3B02G486500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G414800 dirigent, putative, expressed -
2 Sobic.010G191600 cytochrome P450, putative, expressed -
3 Sobic.005G097400 cell death associated protein, putative, expressed -
4 Sobic.001G218400 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@MATH domain containing protein, expressed -
5 Sobic.005G217766 - -
6 Sobic.003G257400 "BG3(Ortholog in rice:Xiao et al., 20018)"(PubMedID : 31659870)@purine permease, putative, expressed -
7 Sobic.001G014700 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
8 Sobic.004G029300 periplasmic beta-glucosidase precursor, putative, expressed K05349: beta-glucosidase
9 Sobic.006G133300 expressed protein -
10 Sobic.003G154500 helix-loop-helix DNA-binding domain containing protein, expressed -
11 Sobic.005G166700 sulfotransferase domain containing protein, expressed -
12 Sobic.006G059800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
13 Sobic.003G280000 myb-like DNA-binding domain containing protein, putative, expressed K09422: transcription factor MYB, plant
14 Sobic.001G507100 dirigent, putative, expressed -
15 Sobic.006G106900 "cell wall modification, deposition of casparian strips, endodermis, transmembrane"(PubMedID : 24920445)@membrane associated DUF588 domain containing protein, putative, expressed -
16 Sobic.007G014200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
17 Sobic.001G187300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@sulfate transporter, putative, expressed -
18 Sobic.010G070400 DNA binding protein, putative, expressed -
19 Sobic.005G033000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ribose-5-phosphate isomerase A, putative, expressed K01807: ribose 5-phosphate isomerase A
20 Sobic.007G206800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lectin-like protein kinase, putative, expressed -


Gene co-expression network
sample Sobic008G109300 Sobic008G109300 Sobic001G414800 Sobic001G414800 Sobic008G109300--Sobic001G414800 Sobic010G191600 Sobic010G191600 Sobic008G109300--Sobic010G191600 Sobic005G097400 Sobic005G097400 Sobic008G109300--Sobic005G097400 Sobic001G218400 Sobic001G218400 Sobic008G109300--Sobic001G218400 Sobic005G217766 Sobic005G217766 Sobic008G109300--Sobic005G217766 Sobic003G257400 Sobic003G257400 Sobic008G109300--Sobic003G257400 Sobic001G014700 Sobic001G014700 Sobic008G109300--Sobic001G014700 Sobic004G029300 Sobic004G029300 Sobic008G109300--Sobic004G029300 Sobic006G133300 Sobic006G133300 Sobic008G109300--Sobic006G133300 Sobic006G106900 Sobic006G106900 Sobic001G414800--Sobic006G106900 Sobic001G507100 Sobic001G507100 Sobic001G414800--Sobic001G507100 Sobic001G414800--Sobic010G191600 Sobic007G206800 Sobic007G206800 Sobic001G414800--Sobic007G206800 Sobic003G064800 Sobic003G064800 Sobic001G414800--Sobic003G064800 Sobic001G414800--Sobic005G217766 Sobic001G414800--Sobic005G097400 Sobic007G086300 Sobic007G086300 Sobic001G414800--Sobic007G086300 Sobic008G022100 Sobic008G022100 Sobic001G414800--Sobic008G022100 Sobic010G191600--Sobic005G217766 Sobic010G191600--Sobic005G097400 Sobic002G111900 Sobic002G111900 Sobic010G191600--Sobic002G111900 Sobic002G391400 Sobic002G391400 Sobic010G191600--Sobic002G391400 Sobic006G205700 Sobic006G205700 Sobic010G191600--Sobic006G205700 Sobic010G191600--Sobic001G218400 Sobic010G191700 Sobic010G191700 Sobic010G191600--Sobic010G191700 Sobic003G441800 Sobic003G441800 Sobic010G191600--Sobic003G441800 Sobic010G191600--Sobic007G206800 Sobic005G097400--Sobic010G191600 Sobic002G118801 Sobic002G118801 Sobic005G097400--Sobic002G118801 Sobic005G097400--Sobic006G205700 Sobic001G539200 Sobic001G539200 Sobic005G097400--Sobic001G539200 Sobic004G106100 Sobic004G106100 Sobic005G097400--Sobic004G106100 Sobic005G097400--Sobic001G414800 Sobic005G097400--Sobic002G391400 Sobic003G167300 Sobic003G167300 Sobic005G097400--Sobic003G167300 Sobic005G097400--Sobic007G086300 Sobic006G097900 Sobic006G097900 Sobic001G218400--Sobic006G097900 Sobic004G121600 Sobic004G121600 Sobic001G218400--Sobic004G121600 Sobic001G181600 Sobic001G181600 Sobic001G218400--Sobic001G181600 Sobic001G218400--Sobic003G441800 Sobic001G218400--Sobic010G191600 Sobic003G154500 Sobic003G154500 Sobic001G218400--Sobic003G154500 Sobic003G441700 Sobic003G441700 Sobic001G218400--Sobic003G441700 Sobic010G010000 Sobic010G010000 Sobic001G218400--Sobic010G010000 Sobic005G119900 Sobic005G119900 Sobic001G218400--Sobic005G119900 Sobic005G217766--Sobic010G191600 Sobic005G217766--Sobic002G391400 Sobic005G217766--Sobic002G111900 Sobic005G217766--Sobic006G205700 Sobic005G217766--Sobic001G414800 Sobic005G217766--Sobic007G206800 Sobic005G217766--Sobic003G441800 Sobic005G217766--Sobic010G191700 Sobic005G217766--Sobic004G106100 Sobic003G000100 Sobic003G000100 Sobic003G257400--Sobic003G000100 Sobic003G257400--Sobic007G086300 Sobic003G257400--Sobic004G106100 Sobic003G257400--Sobic006G106900 Sobic003G257400--Sobic001G414800 Sobic003G353200 Sobic003G353200 Sobic003G257400--Sobic003G353200 Sobic003G280000 Sobic003G280000 Sobic003G257400--Sobic003G280000 Sobic006G003100 Sobic006G003100 Sobic003G257400--Sobic006G003100 Sobic004G306900 Sobic004G306900 Sobic003G257400--Sobic004G306900 Sobic001G014700--Sobic003G280000 Sobic001G301000 Sobic001G301000 Sobic001G014700--Sobic001G301000 Sobic002G366200 Sobic002G366200 Sobic001G014700--Sobic002G366200 Sobic010G147200 Sobic010G147200 Sobic001G014700--Sobic010G147200 Sobic001G014700--Sobic005G119900 Sobic001G014700--Sobic003G353200 Sobic005G202300 Sobic005G202300 Sobic001G014700--Sobic005G202300 Sobic008G164450 Sobic008G164450 Sobic001G014700--Sobic008G164450 Sobic008G010500 Sobic008G010500 Sobic001G014700--Sobic008G010500 Sobic010G070400 Sobic010G070400 Sobic004G029300--Sobic010G070400 Sobic004G029300--Sobic003G000100 Sobic004G029300--Sobic003G257400 Sobic004G029300--Sobic001G507100 Sobic004G029300--Sobic001G218400 Sobic004G029300--Sobic004G106100 Sobic004G029300--Sobic005G217766 Sobic004G119800 Sobic004G119800 Sobic004G029300--Sobic004G119800 Sobic004G029300--Sobic010G191600 Sobic001G499900 Sobic001G499900 Sobic006G133300--Sobic001G499900 Sobic006G133300--Sobic010G191600 Sobic006G133300--Sobic007G206800 Sobic006G133300--Sobic002G391400 Sobic009G065700 Sobic009G065700 Sobic006G133300--Sobic009G065700 Sobic006G133300--Sobic005G217766 Sobic006G133300--Sobic001G414800 Sobic006G133300--Sobic003G167300 Sobic006G133300--Sobic010G191700
Octagon: transcription factors


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