Gene annotation
Transcriptome id Sobic.008G109700.1
Synonym Sb08g016400, DMR6
Functional annotation oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
UniProt A0A1B6PD04
Pfam PF14226 PF03171
Panther DB PTHR10209 PTHR10209:SF220
NCBI CDD KOG0143; Iron/ascorbate family oxidoreductases
KEGG Orthology K18054; 2'-deoxymugineic-acid 2'-dioxygenase / mugineic-acid 3-dioxygenase
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT5G24530 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
RAP-DB (Rice) LOC_Os07g07410.2 : oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a040653
Brachypodium KQK00433 , KQK23270 , KQK12006 , KQJ91631
Barley HORVU4Hr1G089480.1 , HORVU3Hr1G093370.1 , HORVU7Hr1G060070.10 , HORVU7Hr1G060070.11 , HORVU7Hr1G060070.12 , HORVU7Hr1G060070.13 , HORVU7Hr1G118760.2 , HORVU4Hr1G072540.2 , HORVU7Hr1G118760.1 , HORVU4Hr1G072540.3 , HORVU7Hr1G061380.1 , HORVU4Hr1G072540.4 , HORVU4Hr1G072540.5 , HORVU0Hr1G029200.2 , HORVU7Hr1G019530.4 , HORVU7Hr1G019530.3 , HORVU7Hr1G019530.2 , HORVU7Hr1G019530.1 , HORVU7Hr1G060070.6 , HORVU7Hr1G060070.7 , HORVU7Hr1G060070.5 , HORVU7Hr1G060070.3 , HORVU7Hr1G060070.1 , HORVU7Hr1G060070.8 , HORVU7Hr1G060070.9
Wheat TraesCS7D02G279500 , TraesCS6A02G033300 , TraesCS7B02G180300 , TraesCS7A02G280900
Populus -


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cDNA sequences
Sobic.008G109700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G160500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@tesmin/TSO1-like CXC domain containing protein, expressed -
2 Sobic.003G111400 - -
3 Sobic.006G139000 carboxyvinyl-carboxyphosphonate phosphorylmutase, putative, expressed -
4 Sobic.001G196700 OsProCP3 - Putative Lysosomal Pro-x Carboxypeptidase homologue, expressed -
5 Sobic.009G055600 TKL_IRAK_CrRLK1L-1.10 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
6 Sobic.006G132400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
7 Sobic.001G367700 rhythmically expressed gene 2 protein, putative, expressed -
8 Sobic.003G442200 chloroplast outer envelope 24 kD protein, putative, expressed -
9 Sobic.003G004500 helix-loop-helix DNA-binding domain containing protein, expressed -
10 Sobic.001G502700 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@nodulin, putative, expressed -
11 Sobic.003G356400 expressed protein -
12 Sobic.001G341001 - -
13 Sobic.009G132600 methyl-binding domain protein MBD, putative, expressed -
14 Sobic.001G310700 protein kinase family protein, putative, expressed K14500: BR-signaling kinase
15 Sobic.006G004500 arginase, putative, expressed K01476: E3.5.3.1, rocF, arginase
16 Sobic.006G063700 OsFBLD6 - F-box, LRR and FBD domain containing protein, expressed -
17 Sobic.002G245000 HECT-domain domain containing protein, expressed K10591: NEDD4, E3 ubiquitin-protein ligase NEDD4
18 Sobic.003G425600 - -
19 Sobic.010G095300 - -
20 Sobic.010G250900 cadmium/zinc-transporting ATPase, putative, expressed K01534: Zn2+/Cd2+-exporting ATPase


Gene co-expression network
sample Sobic008G109700 Sobic008G109700 Sobic008G160500 Sobic008G160500 Sobic008G109700--Sobic008G160500 Sobic003G111400 Sobic003G111400 Sobic008G109700--Sobic003G111400 Sobic006G139000 Sobic006G139000 Sobic008G109700--Sobic006G139000 Sobic001G196700 Sobic001G196700 Sobic008G109700--Sobic001G196700 Sobic009G055600 Sobic009G055600 Sobic008G109700--Sobic009G055600 Sobic006G132400 Sobic006G132400 Sobic008G109700--Sobic006G132400 Sobic001G367700 Sobic001G367700 Sobic008G109700--Sobic001G367700 Sobic003G442200 Sobic003G442200 Sobic008G109700--Sobic003G442200 Sobic003G004500 Sobic003G004500 Sobic008G109700--Sobic003G004500 Sobic003G062400 Sobic003G062400 Sobic008G160500--Sobic003G062400 Sobic001G005600 Sobic001G005600 Sobic008G160500--Sobic001G005600 Sobic009G030400 Sobic009G030400 Sobic008G160500--Sobic009G030400 Sobic006G120800 Sobic006G120800 Sobic008G160500--Sobic006G120800 Sobic002G359900 Sobic002G359900 Sobic008G160500--Sobic002G359900 Sobic002G403200 Sobic002G403200 Sobic008G160500--Sobic002G403200 Sobic008G160500--Sobic003G004500 Sobic009G258400 Sobic009G258400 Sobic008G160500--Sobic009G258400 Sobic001G033400 Sobic001G033400 Sobic008G160500--Sobic001G033400 Sobic005G193700 Sobic005G193700 Sobic003G111400--Sobic005G193700 Sobic001G253400 Sobic001G253400 Sobic003G111400--Sobic001G253400 Sobic006G051750 Sobic006G051750 Sobic003G111400--Sobic006G051750 Sobic005G153200 Sobic005G153200 Sobic003G111400--Sobic005G153200 Sobic001G259250 Sobic001G259250 Sobic003G111400--Sobic001G259250 Sobic002G409250 Sobic002G409250 Sobic003G111400--Sobic002G409250 Sobic003G091400 Sobic003G091400 Sobic003G111400--Sobic003G091400 Sobic006G015750 Sobic006G015750 Sobic003G111400--Sobic006G015750 Sobic004G142000 Sobic004G142000 Sobic003G111400--Sobic004G142000 Sobic002G058500 Sobic002G058500 Sobic006G139000--Sobic002G058500 Sobic001G417600 Sobic001G417600 Sobic006G139000--Sobic001G417600 Sobic001G280000 Sobic001G280000 Sobic006G139000--Sobic001G280000 Sobic005G019800 Sobic005G019800 Sobic006G139000--Sobic005G019800 Sobic001G395700 Sobic001G395700 Sobic006G139000--Sobic001G395700 Sobic003G226200 Sobic003G226200 Sobic006G139000--Sobic003G226200 Sobic005G197100 Sobic005G197100 Sobic006G139000--Sobic005G197100 Sobic003G304200 Sobic003G304200 Sobic006G139000--Sobic003G304200 Sobic006G139000--Sobic009G055600 Sobic001G196700--Sobic006G132400 Sobic001G196700--Sobic001G367700 Sobic010G168500 Sobic010G168500 Sobic001G196700--Sobic010G168500 Sobic003G376000 Sobic003G376000 Sobic001G196700--Sobic003G376000 Sobic002G077600 Sobic002G077600 Sobic001G196700--Sobic002G077600 Sobic007G049400 Sobic007G049400 Sobic001G196700--Sobic007G049400 Sobic001G112250 Sobic001G112250 Sobic001G196700--Sobic001G112250 Sobic005G112066 Sobic005G112066 Sobic001G196700--Sobic005G112066 Sobic001G253501 Sobic001G253501 Sobic001G196700--Sobic001G253501 Sobic009G055600--Sobic001G196700 Sobic009G055600--Sobic009G030400 Sobic009G132600 Sobic009G132600 Sobic009G055600--Sobic009G132600 Sobic009G055600--Sobic008G160500 Sobic009G237700 Sobic009G237700 Sobic009G055600--Sobic009G237700 Sobic009G055600--Sobic002G403200 Sobic010G207400 Sobic010G207400 Sobic009G055600--Sobic010G207400 Sobic009G055600--Sobic006G139000 Sobic009G055600--Sobic010G168500 Sobic006G132400--Sobic001G196700 Sobic006G132400--Sobic003G376000 Sobic008G154400 Sobic008G154400 Sobic006G132400--Sobic008G154400 Sobic006G132400--Sobic005G112066 Sobic007G156300 Sobic007G156300 Sobic006G132400--Sobic007G156300 Sobic002G077500 Sobic002G077500 Sobic006G132400--Sobic002G077500 Sobic006G132400--Sobic007G049400 Sobic001G326000 Sobic001G326000 Sobic006G132400--Sobic001G326000 Sobic010G095300 Sobic010G095300 Sobic006G132400--Sobic010G095300 Sobic001G367700--Sobic001G196700 Sobic003G242200 Sobic003G242200 Sobic001G367700--Sobic003G242200 Sobic005G110445 Sobic005G110445 Sobic001G367700--Sobic005G110445 Sobic001G394100 Sobic001G394100 Sobic001G367700--Sobic001G394100 Sobic005G199300 Sobic005G199300 Sobic001G367700--Sobic005G199300 Sobic003G392500 Sobic003G392500 Sobic001G367700--Sobic003G392500 Sobic009G010000 Sobic009G010000 Sobic001G367700--Sobic009G010000 Sobic009G013400 Sobic009G013400 Sobic001G367700--Sobic009G013400 Sobic010G142300 Sobic010G142300 Sobic001G367700--Sobic010G142300 Sobic003G442200--Sobic010G095300 Sobic006G038350 Sobic006G038350 Sobic003G442200--Sobic006G038350 Sobic009G009800 Sobic009G009800 Sobic003G442200--Sobic009G009800 Sobic007G062700 Sobic007G062700 Sobic003G442200--Sobic007G062700 Sobic010G153800 Sobic010G153800 Sobic003G442200--Sobic010G153800 Sobic005G199101 Sobic005G199101 Sobic003G442200--Sobic005G199101 Sobic002G091800 Sobic002G091800 Sobic003G442200--Sobic002G091800 Sobic003G442200--Sobic010G142300 Sobic006G034275 Sobic006G034275 Sobic003G442200--Sobic006G034275 Sobic010G250900 Sobic010G250900 Sobic003G004500--Sobic010G250900 Sobic005G050600 Sobic005G050600 Sobic003G004500--Sobic005G050600 Sobic008G064250 Sobic008G064250 Sobic003G004500--Sobic008G064250 Sobic003G425600 Sobic003G425600 Sobic003G004500--Sobic003G425600 Sobic005G083160 Sobic005G083160 Sobic003G004500--Sobic005G083160 Sobic005G032400 Sobic005G032400 Sobic003G004500--Sobic005G032400 Sobic010G107300 Sobic010G107300 Sobic003G004500--Sobic010G107300 Sobic001G233900 Sobic001G233900 Sobic003G004500--Sobic001G233900 Sobic007G018200 Sobic007G018200 Sobic003G004500--Sobic007G018200
Octagon: transcription factors


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