Gene annotation
Transcriptome id Sobic.008G157600.2,Sobic.008G157600.1
Synonym USPL1, Sb08g020650, ATUSPL1
Functional annotation BURP domain containing protein, expressed
UniProt A0A1B6PDX6 , A0A1B6PE00
Pfam PF03181
Panther DB PTHR31236 PTHR31236:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G49320 : unknown seed protein like 1
RAP-DB (Rice) LOC_Os06g17000.1,LOC_Os08g38810.1 : BURP domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G157600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G055000 TKL_IRAK_DUF26-lc.12 - DUF26 kinases have homology to DUF26 containing loci, expressed -
2 Sobic.006G093100 ferric-chelate reductase, putative, expressed -
3 Sobic.002G001900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF584 domain containing protein, putative, expressed -
4 Sobic.008G033200 stem-specific protein TSJT1, putative, expressed -
5 Sobic.009G140000 MLO domain containing protein, putative, expressed K08472: mlo protein
6 Sobic.006G130000 STRUBBELIG-RECEPTOR FAMILY 8 precursor, putative, expressed K13436: pto-interacting protein 1
7 Sobic.006G260800 phosphatidate cytidylyltransferase, putative, expressed K18678: phytol kinase
8 Sobic.004G268300 phosphatase, putative, expressed -
9 Sobic.004G211600 psaB translation factor, putative, expressed -
10 Sobic.009G123900 L1P family of ribosomal proteins domain containing protein, expressed K02863: RP-L1, MRPL1, large subunit ribosomal protein L1
11 Sobic.004G298900 OR, putative, expressed -
12 Sobic.004G151500 AP2 domain containing protein, expressed -
13 Sobic.001G521200 expressed protein -
14 Sobic.002G056500 with no lysine (K) kinase 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STE_PAK_Ste20_Slob_Wnk.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08867: WNK, WNK lysine deficient protein kinase
15 Sobic.002G049600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
16 Sobic.009G062400 uvrB/uvrC motif family protein, expressed -
17 Sobic.004G006400 cytochrome P450, putative, expressed -
18 Sobic.004G154400 drought-induced protein 1, putative, expressed -
19 Sobic.003G010200 cytochrome P450, putative, expressed -
20 Sobic.004G284001 - -


Gene co-expression network
sample Sobic008G157600 Sobic008G157600 Sobic006G055000 Sobic006G055000 Sobic008G157600--Sobic006G055000 Sobic006G093100 Sobic006G093100 Sobic008G157600--Sobic006G093100 Sobic002G001900 Sobic002G001900 Sobic008G157600--Sobic002G001900 Sobic008G033200 Sobic008G033200 Sobic008G157600--Sobic008G033200 Sobic009G140000 Sobic009G140000 Sobic008G157600--Sobic009G140000 Sobic006G130000 Sobic006G130000 Sobic008G157600--Sobic006G130000 Sobic006G260800 Sobic006G260800 Sobic008G157600--Sobic006G260800 Sobic004G268300 Sobic004G268300 Sobic008G157600--Sobic004G268300 Sobic004G211600 Sobic004G211600 Sobic008G157600--Sobic004G211600 Sobic005G187900 Sobic005G187900 Sobic006G055000--Sobic005G187900 Sobic006G055000--Sobic009G140000 Sobic002G232200 Sobic002G232200 Sobic006G055000--Sobic002G232200 Sobic006G055000--Sobic008G157600 Sobic003G255900 Sobic003G255900 Sobic006G055000--Sobic003G255900 Sobic006G055000--Sobic006G260800 Sobic004G298900 Sobic004G298900 Sobic006G055000--Sobic004G298900 Sobic004G268500 Sobic004G268500 Sobic006G055000--Sobic004G268500 Sobic009G062400 Sobic009G062400 Sobic006G055000--Sobic009G062400 Sobic004G215800 Sobic004G215800 Sobic006G093100--Sobic004G215800 Sobic002G390100 Sobic002G390100 Sobic006G093100--Sobic002G390100 Sobic003G036200 Sobic003G036200 Sobic006G093100--Sobic003G036200 Sobic002G196600 Sobic002G196600 Sobic006G093100--Sobic002G196600 Sobic007G105500 Sobic007G105500 Sobic006G093100--Sobic007G105500 Sobic006G093100--Sobic008G033200 Sobic003G042900 Sobic003G042900 Sobic006G093100--Sobic003G042900 Sobic008G033000 Sobic008G033000 Sobic006G093100--Sobic008G033000 Sobic002G404800 Sobic002G404800 Sobic006G093100--Sobic002G404800 Sobic006G123500 Sobic006G123500 Sobic002G001900--Sobic006G123500 Sobic002G001900--Sobic004G268500 Sobic003G223400 Sobic003G223400 Sobic002G001900--Sobic003G223400 Sobic001G314400 Sobic001G314400 Sobic002G001900--Sobic001G314400 Sobic008G065200 Sobic008G065200 Sobic002G001900--Sobic008G065200 Sobic009G045600 Sobic009G045600 Sobic002G001900--Sobic009G045600 Sobic002G001900--Sobic003G255900 Sobic002G001900--Sobic006G055000 Sobic004G099700 Sobic004G099700 Sobic002G001900--Sobic004G099700 Sobic008G033200--Sobic003G036200 Sobic002G324500 Sobic002G324500 Sobic008G033200--Sobic002G324500 Sobic008G033200--Sobic004G215800 Sobic008G033200--Sobic006G093100 Sobic006G120500 Sobic006G120500 Sobic008G033200--Sobic006G120500 Sobic008G033200--Sobic002G390100 Sobic008G117000 Sobic008G117000 Sobic008G033200--Sobic008G117000 Sobic008G033200--Sobic007G105500 Sobic003G185900 Sobic003G185900 Sobic008G033200--Sobic003G185900 Sobic009G140000--Sobic006G260800 Sobic005G001700 Sobic005G001700 Sobic009G140000--Sobic005G001700 Sobic009G140000--Sobic006G055000 Sobic009G140000--Sobic009G062400 Sobic001G517700 Sobic001G517700 Sobic009G140000--Sobic001G517700 Sobic002G403600 Sobic002G403600 Sobic009G140000--Sobic002G403600 Sobic009G123900 Sobic009G123900 Sobic009G140000--Sobic009G123900 Sobic008G052900 Sobic008G052900 Sobic009G140000--Sobic008G052900 Sobic009G219100 Sobic009G219100 Sobic009G140000--Sobic009G219100 Sobic006G064200 Sobic006G064200 Sobic006G130000--Sobic006G064200 Sobic006G130000--Sobic006G055000 Sobic006G130000--Sobic008G033200 Sobic002G201900 Sobic002G201900 Sobic006G130000--Sobic002G201900 Sobic002G200700 Sobic002G200700 Sobic006G130000--Sobic002G200700 Sobic005G089600 Sobic005G089600 Sobic006G130000--Sobic005G089600 Sobic007G141700 Sobic007G141700 Sobic006G130000--Sobic007G141700 Sobic006G130000--Sobic002G232200 Sobic003G224100 Sobic003G224100 Sobic006G130000--Sobic003G224100 Sobic006G260800--Sobic004G298900 Sobic010G214100 Sobic010G214100 Sobic006G260800--Sobic010G214100 Sobic002G112400 Sobic002G112400 Sobic006G260800--Sobic002G112400 Sobic005G111550 Sobic005G111550 Sobic006G260800--Sobic005G111550 Sobic003G160800 Sobic003G160800 Sobic006G260800--Sobic003G160800 Sobic006G260800--Sobic009G062400 Sobic006G260800--Sobic005G001700 Sobic006G260800--Sobic004G211600 Sobic006G260800--Sobic009G140000 Sobic004G268300--Sobic008G052900 Sobic002G206300 Sobic002G206300 Sobic004G268300--Sobic002G206300 Sobic004G268300--Sobic009G219100 Sobic004G151500 Sobic004G151500 Sobic004G268300--Sobic004G151500 Sobic002G402700 Sobic002G402700 Sobic004G268300--Sobic002G402700 Sobic008G074000 Sobic008G074000 Sobic004G268300--Sobic008G074000 Sobic003G306600 Sobic003G306600 Sobic004G268300--Sobic003G306600 Sobic001G504400 Sobic001G504400 Sobic004G268300--Sobic001G504400 Sobic001G540600 Sobic001G540600 Sobic004G268300--Sobic001G540600 Sobic006G101500 Sobic006G101500 Sobic004G211600--Sobic006G101500 Sobic005G063000 Sobic005G063000 Sobic004G211600--Sobic005G063000 Sobic001G183000 Sobic001G183000 Sobic004G211600--Sobic001G183000 Sobic004G211600--Sobic010G214100 Sobic008G006100 Sobic008G006100 Sobic004G211600--Sobic008G006100 Sobic001G134700 Sobic001G134700 Sobic004G211600--Sobic001G134700 Sobic004G211600--Sobic009G062400 Sobic004G211600--Sobic004G298900 Sobic004G211600--Sobic003G160800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.