Gene annotation
| Transcriptome id | Sobic.008G162600.1 |
|---|---|
| Synonym | ATSMO1-2, ATSMO1, SMO1, SMO1-2 |
| Functional annotation | fatty acid hydroxylase, putative, expressed |
| UniProt | A0A1Z5R763 |
| Pfam | PF04116 |
| Panther DB | PTHR11863 PTHR11863:SF51 |
| NCBI CDD | KOG0873; C-4 sterol methyl oxidase |
| KEGG Orthology | - |
| Gene Ontology | GO:0016491; oxidoreductase activity GO:0006633fatty acid biosynthetic process GO:0005506iron ion binding |
Orthologs (automatic annotation)
| TAIR | AT4G22756 : sterol C4-methyl oxidase 1-2 |
|---|---|
| RAP-DB (Rice) | LOC_Os10g39810.1 : fatty acid hydroxylase, putative, expressed |
| MaizeGDB (Corn) | Zm00025a025329 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.008G162600 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G150650 | - | - |
| 2 | Sobic.002G020950 | - | - |
| 3 | Sobic.002G020950 | - | - |
| 4 | Sobic.006G100400 | SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein | - |
| 5 | Sobic.010G170550 | - | - |
| 6 | Sobic.001G412700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@IN2-1 protein, putative, expressed | K00799: GST, glutathione S-transferase |
| 7 | Sobic.006G039000 | - | - |
| 8 | Sobic.004G255000 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@aspartic proteinase nepenthesin-2 precursor, putative, expressed | - |
| 9 | Sobic.003G269700 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under drought(PubMedID : 24916767)@SAM dependent carboxyl methyltransferase, putative, expressed | - |
| 10 | Sobic.003G259200 | -(PubMedID : 26976818)@uncharacterized kinase mug58, putative, expressed | K15918: D-glycerate 3-kinase |
| 11 | Sobic.002G085300 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 12 | Sobic.002G265700 | zinc knuckle family protein, expressed | - |
| 13 | Sobic.003G315500 | adhesive/proline-rich protein, putative, expressed | - |
| 14 | Sobic.004G162400 | ERD1 protein, chloroplast precursor, putative, expressed | K03696: ATP-dependent Clp protease ATP-binding subunit ClpC |
| 15 | Sobic.001G150600 | oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K13606: NOL, chlorophyll(ide) b reductase |
| 16 | Sobic.001G162700 | "phosphatidylinositol phosphatase, up-regulated under severe drought stress"(PubMedID : 24655390)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@endonuclease/exonuclease/phosphatase family domain containing protein, expressed | K01106: inositol-1,4,5-trisphosphate 5-phosphatase |
| 17 | Sobic.003G257100 | YT521-B-like family domain containing protein, expressed | - |
| 18 | Sobic.003G265100 | lipid phosphatase protein, putative, expressed | - |
| 19 | Sobic.008G175032 | - | - |
| 20 | Sobic.009G029600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutamate--cysteine ligase, chloroplast precursor, putative, expressed | K01919: glutamate--cysteine ligase |
Gene co-expression network
Octagon: transcription factors
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