Gene annotation
Transcriptome id Sobic.008G191000.1
Synonym Sb08g023120, LOX5
Functional annotation lipoxygenase, putative, expressed
UniProt C5YT28 , A0A1B6PEP8
Pfam PF01477 PF00305
Panther DB PTHR11771 PTHR11771:SF59
NCBI CDD -
KEGG Orthology K00454; lipoxygenase
Gene Ontology GO:0005515; protein binding GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen


Orthologs (automatic annotation)
TAIR AT3G22400 : PLAT/LH2 domain-containing lipoxygenase family protein
RAP-DB (Rice) LOC_Os05g23880.1 : lipoxygenase, putative, expressed
MaizeGDB (Corn) Zm00025a025065
Brachypodium KQK01989 , KQK01990 , KQK01991 , PNT69657
Barley HORVU1Hr1G054390.14 , HORVU1Hr1G054390.16 , HORVU1Hr1G054390.17 , HORVU1Hr1G054390.10 , HORVU1Hr1G054390.11 , HORVU1Hr1G054390.12 , HORVU1Hr1G054390.13 , HORVU1Hr1G054390.18 , HORVU1Hr1G054390.19 , HORVU1Hr1G054390.15 , HORVU1Hr1G054390.29 , HORVU1Hr1G054390.28 , HORVU1Hr1G054390.21 , HORVU1Hr1G054390.20 , HORVU1Hr1G054390.23 , HORVU1Hr1G054390.22 , HORVU1Hr1G054390.25 , HORVU1Hr1G054390.24 , HORVU1Hr1G054390.27 , HORVU1Hr1G054390.26 , HORVU1Hr1G054390.8 , HORVU1Hr1G054390.9 , HORVU1Hr1G054390.6 , HORVU1Hr1G054390.7 , HORVU1Hr1G054390.4 , HORVU1Hr1G054390.5 , HORVU1Hr1G054390.2 , HORVU1Hr1G054390.3 , HORVU1Hr1G054390.1 , HORVU1Hr1G054390.32 , HORVU1Hr1G054390.33 , HORVU1Hr1G054390.30 , HORVU1Hr1G054390.31 , HORVU7Hr1G050680.9 , HORVU7Hr1G050680.2 , HORVU7Hr1G050680.3 , HORVU7Hr1G050680.1 , HORVU7Hr1G050680.7 , HORVU7Hr1G050680.4 , HORVU7Hr1G050680.5
Wheat TraesCS2D02G313400 , TraesCS2A02G315100 , TraesCS2A02G315100 , TraesCS1A02G212900 , TraesCS1B02G226400 , TraesCS7B02G145200 , TraesCS4D02G347300 , TraesCS1D02G215800 , TraesCS1D02G215800 , TraesCS7D02G244800 , TraesCS2B02G333600
Populus -


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cDNA sequences
Sobic.008G191000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G046850 - -
2 Sobic.001G087700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oligopeptide transporter, putative, expressed -
3 Sobic.001G470900 sulfate transporter, putative, expressed K17469: sulfate transporter 2, low-affinity
4 Sobic.004G097300 phosphoethanolamine/phosphocholine phosphatase, putative, expressed K13248: pyridoxal phosphate phosphatase PHOSPHO2
5 Sobic.001G338500 ACT domain containing protein, expressed -
6 Sobic.002G086800 expressed protein -
7 Sobic.009G246200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@secretory protein, putative, expressed -
8 Sobic.009G220933 - -
9 Sobic.001G496300 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase protein, putative, expressed K08967: mtnD, mtnZ, 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase
10 Sobic.002G011400 HLS, putative, expressed -
11 Sobic.004G026300 heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed K13993: HSP20 family protein
12 Sobic.001G391300 "Expressed in drought, cold and heat"(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@glycosyl transferase 8 domain containing protein, putative, expressed K18819: inositol 3-alpha-galactosyltransferase
13 Sobic.004G178000 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@OsRR2 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
14 Sobic.001G068400 - -
15 Sobic.006G220200 CPuORF12 - conserved peptide uORF-containing transcript, expressed K17839: PAO4, PAO3, polyamine oxidase
16 Sobic.003G395900 transmembrane amino acid transporter protein, putative, expressed -
17 Sobic.003G032900 expressed protein -
18 Sobic.003G131000 expressed protein -
19 Sobic.006G090300 Negative regulator of cytokinine(PubMedID : 30367619)@OsRR1 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
20 Sobic.002G216400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -


Gene co-expression network
sample Sobic008G191000 Sobic008G191000 Sobic004G046850 Sobic004G046850 Sobic008G191000--Sobic004G046850 Sobic001G087700 Sobic001G087700 Sobic008G191000--Sobic001G087700 Sobic001G470900 Sobic001G470900 Sobic008G191000--Sobic001G470900 Sobic004G097300 Sobic004G097300 Sobic008G191000--Sobic004G097300 Sobic001G338500 Sobic001G338500 Sobic008G191000--Sobic001G338500 Sobic002G086800 Sobic002G086800 Sobic008G191000--Sobic002G086800 Sobic009G246200 Sobic009G246200 Sobic008G191000--Sobic009G246200 Sobic009G220933 Sobic009G220933 Sobic008G191000--Sobic009G220933 Sobic001G496300 Sobic001G496300 Sobic008G191000--Sobic001G496300 Sobic001G068400 Sobic001G068400 Sobic004G046850--Sobic001G068400 Sobic004G026300 Sobic004G026300 Sobic004G046850--Sobic004G026300 Sobic001G189100 Sobic001G189100 Sobic004G046850--Sobic001G189100 Sobic003G131000 Sobic003G131000 Sobic004G046850--Sobic003G131000 Sobic003G237600 Sobic003G237600 Sobic004G046850--Sobic003G237600 Sobic003G069100 Sobic003G069100 Sobic004G046850--Sobic003G069100 Sobic001G355600 Sobic001G355600 Sobic004G046850--Sobic001G355600 Sobic009G222200 Sobic009G222200 Sobic004G046850--Sobic009G222200 Sobic001G087700--Sobic001G470900 Sobic001G087700--Sobic002G086800 Sobic001G110900 Sobic001G110900 Sobic001G087700--Sobic001G110900 Sobic001G391300 Sobic001G391300 Sobic001G087700--Sobic001G391300 Sobic006G220300 Sobic006G220300 Sobic001G087700--Sobic006G220300 Sobic007G160200 Sobic007G160200 Sobic001G087700--Sobic007G160200 Sobic003G389700 Sobic003G389700 Sobic001G087700--Sobic003G389700 Sobic010G092600 Sobic010G092600 Sobic001G087700--Sobic010G092600 Sobic004G332100 Sobic004G332100 Sobic001G087700--Sobic004G332100 Sobic001G470900--Sobic001G087700 Sobic001G470900--Sobic002G086800 Sobic001G470900--Sobic001G496300 Sobic001G470900--Sobic006G220300 Sobic001G470900--Sobic001G110900 Sobic004G058700 Sobic004G058700 Sobic001G470900--Sobic004G058700 Sobic001G470900--Sobic003G389700 Sobic001G498000 Sobic001G498000 Sobic001G470900--Sobic001G498000 Sobic001G470900--Sobic004G332100 Sobic004G097300--Sobic001G391300 Sobic004G276200 Sobic004G276200 Sobic004G097300--Sobic004G276200 Sobic002G322000 Sobic002G322000 Sobic004G097300--Sobic002G322000 Sobic006G066800 Sobic006G066800 Sobic004G097300--Sobic006G066800 Sobic006G220200 Sobic006G220200 Sobic004G097300--Sobic006G220200 Sobic008G014200 Sobic008G014200 Sobic004G097300--Sobic008G014200 Sobic003G313900 Sobic003G313900 Sobic004G097300--Sobic003G313900 Sobic004G097300--Sobic002G086800 Sobic004G097300--Sobic001G496300 Sobic010G276400 Sobic010G276400 Sobic001G338500--Sobic010G276400 Sobic003G199800 Sobic003G199800 Sobic001G338500--Sobic003G199800 Sobic010G109500 Sobic010G109500 Sobic001G338500--Sobic010G109500 Sobic004G026700 Sobic004G026700 Sobic001G338500--Sobic004G026700 Sobic002G000500 Sobic002G000500 Sobic001G338500--Sobic002G000500 Sobic004G035500 Sobic004G035500 Sobic001G338500--Sobic004G035500 Sobic001G338500--Sobic004G026300 Sobic001G338500--Sobic001G068400 Sobic006G147300 Sobic006G147300 Sobic001G338500--Sobic006G147300 Sobic002G086800--Sobic001G470900 Sobic002G086800--Sobic001G391300 Sobic002G086800--Sobic001G087700 Sobic002G086800--Sobic004G332100 Sobic003G395900 Sobic003G395900 Sobic002G086800--Sobic003G395900 Sobic002G086800--Sobic006G220300 Sobic008G171000 Sobic008G171000 Sobic002G086800--Sobic008G171000 Sobic002G086800--Sobic003G389700 Sobic002G086800--Sobic006G220200 Sobic002G075500 Sobic002G075500 Sobic009G246200--Sobic002G075500 Sobic009G063400 Sobic009G063400 Sobic009G246200--Sobic009G063400 Sobic009G232200 Sobic009G232200 Sobic009G246200--Sobic009G232200 Sobic009G246200--Sobic008G191000 Sobic005G096101 Sobic005G096101 Sobic009G246200--Sobic005G096101 Sobic009G221900 Sobic009G221900 Sobic009G246200--Sobic009G221900 Sobic003G095700 Sobic003G095700 Sobic009G246200--Sobic003G095700 Sobic009G215000 Sobic009G215000 Sobic009G246200--Sobic009G215000 Sobic007G114500 Sobic007G114500 Sobic009G246200--Sobic007G114500 Sobic009G220933--Sobic004G046850 Sobic009G220933--Sobic001G355600 Sobic009G220933--Sobic001G068400 Sobic009G220933--Sobic003G395900 Sobic009G220933--Sobic004G026300 Sobic009G220933--Sobic008G191000 Sobic009G220933--Sobic001G189100 Sobic001G297400 Sobic001G297400 Sobic009G220933--Sobic001G297400 Sobic001G496300--Sobic001G470900 Sobic009G017800 Sobic009G017800 Sobic001G496300--Sobic009G017800 Sobic001G496300--Sobic003G313900 Sobic001G496300--Sobic006G220200 Sobic001G496300--Sobic006G066800 Sobic003G125701 Sobic003G125701 Sobic001G496300--Sobic003G125701 Sobic001G407600 Sobic001G407600 Sobic001G496300--Sobic001G407600 Sobic006G097200 Sobic006G097200 Sobic001G496300--Sobic006G097200 Sobic010G047700 Sobic010G047700 Sobic001G496300--Sobic010G047700
Octagon: transcription factors


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