Gene annotation
Transcriptome id Sobic.004G178000.2
Synonym ARR3, ARR3, Type-A response regulator 3, Sb04g022780
Functional annotation Decreased expression in phyB-1 mutant (PubMedID : 26893475)
OsRR2 type-A response regulator, expressed
UniProt C5XUT8
Pfam PF00072
Panther DB PTHR26402 PTHR26402:SF604
NCBI CDD -
KEGG Orthology K14492; two-component response regulator ARR-A family
Gene Ontology GO:0000160; phosphorelay signal transduction system


Orthologs (automatic annotation)
TAIR AT1G59940 : response regulator 3
RAP-DB (Rice) LOC_Os02g35180.1 : OsRR2 type-A response regulator, expressed
MaizeGDB (Corn) Zm00025a056126 , Zm00025a031618
Brachypodium KQJ99903 , KQJ82846
Barley HORVU2Hr1G077000.6 , HORVU2Hr1G077000.4 , HORVU2Hr1G077000.5 , HORVU2Hr1G077000.2 , HORVU2Hr1G077000.3
Wheat TraesCS2A02G309700 , TraesCS2B02G326800 , TraesCS2B02G326800
Populus -


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cDNA sequences
Sobic.004G178000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G095700 glycosyltransferase, putative, expressed -
2 Sobic.004G073500 "domain confirmed by Pfam database, expressed in leaf, flower and root, expression induced by BR treatment"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
3 Sobic.006G012200 flavin monooxygenase, putative, expressed K11816: indole-3-pyruvate monooxygenase
4 Sobic.001G169200 "domain confirmed by Pfam database, expression induced by BR treatment"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
5 Sobic.002G173500 cytokinin-O-glucosyltransferase 1, putative, expressed -
6 Sobic.010G122200 cadmium tolerance factor, putative, expressed -
7 Sobic.003G385700 - -
8 Sobic.006G220800 -(PubMedID : 26976818)@aminomethyltransferase, putative, expressed K00605: gcvT, aminomethyltransferase
9 Sobic.008G104801 - -
10 Sobic.010G187500 CRAL/TRIO domain containing protein, expressed -
11 Sobic.004G026700 down-regulated TF in developmental senescence(PubMedID : 27586543)@transcription factor, putative, expressed K09060: plant G-box-binding factor
12 Sobic.008G191000 lipoxygenase, putative, expressed K00454: lipoxygenase
13 Sobic.010G015800 zinc RING finger protein, putative, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
14 Sobic.001G215600 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
15 Sobic.004G075800 chloride channel protein, putative, expressed K05016: chloride channel 7
16 Sobic.005G069000 OsWAK124 - OsWAK receptor-like protein OsWAK-RLP, expressed -
17 Sobic.004G260800 Fatty acid desaturase 2 (omega-6 fatty acid desaturase) FAD2 (Os)(PubMedID : 27208977)@Fatty acid desaturase 2 (omega-6 fatty acid desaturase) FAD2 (At)(PubMedID : 27208977)@fatty acid desaturase, putative, expressed K10256: omega-6 fatty acid desaturase / acyl-lipid omega-6 desaturase (Delta-12 desaturase)
18 Sobic.003G428300 Decreased expression in phyB-1 mutant(PubMedID : 26893475)@OsRR4 type-A response regulator, expressed K14492: two-component response regulator ARR-A family
19 Sobic.001G327900 SHR, putative, expressed -
20 Sobic.007G194700 phosphoribulokinase/Uridine kinase family protein, expressed K00876: udk, uridine kinase


Gene co-expression network
sample Sobic004G178000 Sobic004G178000 Sobic003G095700 Sobic003G095700 Sobic004G178000--Sobic003G095700 Sobic004G073500 Sobic004G073500 Sobic004G178000--Sobic004G073500 Sobic006G012200 Sobic006G012200 Sobic004G178000--Sobic006G012200 Sobic001G169200 Sobic001G169200 Sobic004G178000--Sobic001G169200 Sobic002G173500 Sobic002G173500 Sobic004G178000--Sobic002G173500 Sobic010G122200 Sobic010G122200 Sobic004G178000--Sobic010G122200 Sobic003G385700 Sobic003G385700 Sobic004G178000--Sobic003G385700 Sobic006G220800 Sobic006G220800 Sobic004G178000--Sobic006G220800 Sobic008G104801 Sobic008G104801 Sobic004G178000--Sobic008G104801 Sobic003G428300 Sobic003G428300 Sobic003G095700--Sobic003G428300 Sobic009G017500 Sobic009G017500 Sobic003G095700--Sobic009G017500 Sobic007G147800 Sobic007G147800 Sobic003G095700--Sobic007G147800 Sobic001G208600 Sobic001G208600 Sobic003G095700--Sobic001G208600 Sobic006G256200 Sobic006G256200 Sobic003G095700--Sobic006G256200 Sobic008G072600 Sobic008G072600 Sobic003G095700--Sobic008G072600 Sobic004G007600 Sobic004G007600 Sobic003G095700--Sobic004G007600 Sobic003G095700--Sobic004G178000 Sobic009G236100 Sobic009G236100 Sobic003G095700--Sobic009G236100 Sobic003G266500 Sobic003G266500 Sobic004G073500--Sobic003G266500 Sobic004G097000 Sobic004G097000 Sobic004G073500--Sobic004G097000 Sobic001G439200 Sobic001G439200 Sobic004G073500--Sobic001G439200 Sobic010G019700 Sobic010G019700 Sobic004G073500--Sobic010G019700 Sobic008G186400 Sobic008G186400 Sobic004G073500--Sobic008G186400 Sobic008G068200 Sobic008G068200 Sobic004G073500--Sobic008G068200 Sobic010G023700 Sobic010G023700 Sobic004G073500--Sobic010G023700 Sobic006G147300 Sobic006G147300 Sobic004G073500--Sobic006G147300 Sobic003G431900 Sobic003G431900 Sobic004G073500--Sobic003G431900 Sobic006G117100 Sobic006G117100 Sobic006G012200--Sobic006G117100 Sobic001G278500 Sobic001G278500 Sobic006G012200--Sobic001G278500 Sobic004G121900 Sobic004G121900 Sobic006G012200--Sobic004G121900 Sobic003G405000 Sobic003G405000 Sobic006G012200--Sobic003G405000 Sobic007G058200 Sobic007G058200 Sobic006G012200--Sobic007G058200 Sobic006G190300 Sobic006G190300 Sobic006G012200--Sobic006G190300 Sobic005G069000 Sobic005G069000 Sobic006G012200--Sobic005G069000 Sobic005G196300 Sobic005G196300 Sobic006G012200--Sobic005G196300 Sobic006G012200--Sobic004G178000 Sobic003G163700 Sobic003G163700 Sobic001G169200--Sobic003G163700 Sobic003G163500 Sobic003G163500 Sobic001G169200--Sobic003G163500 Sobic005G086300 Sobic005G086300 Sobic001G169200--Sobic005G086300 Sobic005G111200 Sobic005G111200 Sobic001G169200--Sobic005G111200 Sobic009G171300 Sobic009G171300 Sobic001G169200--Sobic009G171300 Sobic010G214600 Sobic010G214600 Sobic001G169200--Sobic010G214600 Sobic001G066600 Sobic001G066600 Sobic001G169200--Sobic001G066600 Sobic008G117300 Sobic008G117300 Sobic001G169200--Sobic008G117300 Sobic005G099700 Sobic005G099700 Sobic001G169200--Sobic005G099700 Sobic002G030650 Sobic002G030650 Sobic002G173500--Sobic002G030650 Sobic010G187500 Sobic010G187500 Sobic002G173500--Sobic010G187500 Sobic005G110541 Sobic005G110541 Sobic002G173500--Sobic005G110541 Sobic008G058400 Sobic008G058400 Sobic002G173500--Sobic008G058400 Sobic001G388000 Sobic001G388000 Sobic002G173500--Sobic001G388000 Sobic003G270400 Sobic003G270400 Sobic002G173500--Sobic003G270400 Sobic002G173500--Sobic005G069000 Sobic003G023600 Sobic003G023600 Sobic002G173500--Sobic003G023600 Sobic009G006300 Sobic009G006300 Sobic002G173500--Sobic009G006300 Sobic002G303100 Sobic002G303100 Sobic010G122200--Sobic002G303100 Sobic010G015800 Sobic010G015800 Sobic010G122200--Sobic010G015800 Sobic002G317800 Sobic002G317800 Sobic010G122200--Sobic002G317800 Sobic008G064601 Sobic008G064601 Sobic010G122200--Sobic008G064601 Sobic006G201700 Sobic006G201700 Sobic010G122200--Sobic006G201700 Sobic001G131100 Sobic001G131100 Sobic010G122200--Sobic001G131100 Sobic005G096000 Sobic005G096000 Sobic010G122200--Sobic005G096000 Sobic005G194900 Sobic005G194900 Sobic010G122200--Sobic005G194900 Sobic008G107300 Sobic008G107300 Sobic010G122200--Sobic008G107300 Sobic004G201400 Sobic004G201400 Sobic003G385700--Sobic004G201400 Sobic008G036350 Sobic008G036350 Sobic003G385700--Sobic008G036350 Sobic010G128000 Sobic010G128000 Sobic003G385700--Sobic010G128000 Sobic001G344600 Sobic001G344600 Sobic003G385700--Sobic001G344600 Sobic003G385700--Sobic001G169200 Sobic001G435500 Sobic001G435500 Sobic003G385700--Sobic001G435500 Sobic003G385700--Sobic003G163700 Sobic001G260850 Sobic001G260850 Sobic003G385700--Sobic001G260850 Sobic007G220700 Sobic007G220700 Sobic003G385700--Sobic007G220700 Sobic002G120700 Sobic002G120700 Sobic006G220800--Sobic002G120700 Sobic006G220800--Sobic010G023700 Sobic002G051100 Sobic002G051100 Sobic006G220800--Sobic002G051100 Sobic006G220800--Sobic001G344600 Sobic004G035500 Sobic004G035500 Sobic006G220800--Sobic004G035500 Sobic010G241300 Sobic010G241300 Sobic006G220800--Sobic010G241300 Sobic002G030500 Sobic002G030500 Sobic006G220800--Sobic002G030500 Sobic007G213300 Sobic007G213300 Sobic006G220800--Sobic007G213300 Sobic008G066100 Sobic008G066100 Sobic006G220800--Sobic008G066100 Sobic001G233400 Sobic001G233400 Sobic008G104801--Sobic001G233400 Sobic006G060200 Sobic006G060200 Sobic008G104801--Sobic006G060200 Sobic001G217700 Sobic001G217700 Sobic008G104801--Sobic001G217700 Sobic005G084000 Sobic005G084000 Sobic008G104801--Sobic005G084000 Sobic003G137100 Sobic003G137100 Sobic008G104801--Sobic003G137100 Sobic006G103400 Sobic006G103400 Sobic008G104801--Sobic006G103400 Sobic004G023200 Sobic004G023200 Sobic008G104801--Sobic004G023200 Sobic002G289400 Sobic002G289400 Sobic008G104801--Sobic002G289400 Sobic002G301700 Sobic002G301700 Sobic008G104801--Sobic002G301700
Octagon: transcription factors


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