Gene annotation
| Transcriptome id | Sobic.003G395900.1 |
|---|---|
| Synonym | PROT1, Sb03g043280, ATPROT1 |
| Functional annotation | transmembrane amino acid transporter protein, putative, expressed |
| UniProt | C5XFJ4 |
| Pfam | PF01490 |
| Panther DB | PTHR22950 PTHR22950:SF268 |
| NCBI CDD | KOG1303; Amino acid transporters |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G39890 : proline transporter 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os01g68050.1 : transmembrane amino acid transporter protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a026351 |
| Brachypodium | - |
| Barley | HORVU3Hr1G092240.16 , HORVU3Hr1G092240.14 , HORVU3Hr1G092240.15 , HORVU3Hr1G092240.12 , HORVU3Hr1G092240.10 , HORVU3Hr1G092240.11 , HORVU3Hr1G092240.13 , HORVU3Hr1G092240.2 , HORVU3Hr1G092240.8 , HORVU3Hr1G092240.9 , HORVU3Hr1G092240.4 , HORVU3Hr1G092240.5 , HORVU3Hr1G092240.6 , HORVU3Hr1G092240.7 , HORVU3Hr1G092240.3 |
| Wheat | TraesCS3D02G408800 , TraesCS3A02G414300 , TraesCS3B02G449100 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G389700 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein | - |
| 2 | Sobic.004G255600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@neutral/alkaline invertase, putative, expressed | - |
| 3 | Sobic.006G008700 | bifunctional 3-phosphoadenosine 5-phosphosulfate synthetase, putative, expressed | K13811: 3'-phosphoadenosine 5'-phosphosulfate synthase |
| 4 | Sobic.009G140800 | DUF647 domain containing protein, putative, expressed | - |
| 5 | Sobic.006G130300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@-(PubMedID : 26976818)@4-nitrophenylphosphatase, putative, expressed | K19269: PGP, phosphoglycolate phosphatase |
| 6 | Sobic.001G111700 | alpha/beta-Hydrolases superfamily protein(PubMedID : 26465154)@alpha/beta-Hydrolases superfamily protein(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed | - |
| 7 | Sobic.004G283100 | -(PubMedID : 26465154)@expressed protein | - |
| 8 | Sobic.002G086800 | expressed protein | - |
| 9 | Sobic.001G329400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF1230 domain containing protein, expressed | - |
| 10 | Sobic.005G110502 | - | - |
| 11 | Sobic.009G222200 | E3 ubiquitin ligase, putative, expressed | K16276: K16276, zinc finger protein-like protein |
| 12 | Sobic.001G129000 | DnaK family protein, putative, expressed | - |
| 13 | Sobic.001G470900 | sulfate transporter, putative, expressed | K17469: sulfate transporter 2, low-affinity |
| 14 | Sobic.007G140800 | Fatty acid desaturase 6 (omega-6 fatty acid desaturase) FAD6 (At)(PubMedID : 27208977)@omega-6 fatty acid desaturase, chloroplast precursor, putative, expressed | K10255: FAD6, acyl-lipid omega-6 desaturase (Delta-12 desaturase) |
| 15 | Sobic.008G149000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed | - |
| 16 | Sobic.001G020100 | expressed protein | - |
| 17 | Sobic.004G268000 | -(PubMedID : 26976818)@soluble inorganic pyrophosphatase, putative, expressed | K01507: inorganic pyrophosphatase |
| 18 | Sobic.008G068200 | amino acid transporter, putative, expressed | - |
| 19 | Sobic.003G234400 | CA(PubMedID : 19549309)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carbonic anhydrase(PubMedID : 26904072)@-(PubMedID : 26976818)@carbonic anhydrase, chloroplast precursor, putative, expressed | K01673: cynT, carbonic anhydrase |
| 20 | Sobic.001G076900 | Uncharacterised protein family (UPF0497)(PubMedID : 26465154)@membrane associated DUF588 domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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