Gene annotation
| Transcriptome id | Sobic.002G011400.1 |
|---|---|
| Synonym | COP3, HLS1, UNS2, Sb02g001200 |
| Functional annotation | HLS, putative, expressed |
| UniProt | C5X7V5 |
| Pfam | PF00583 |
| Panther DB | PTHR23091 PTHR23091:SF211 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0008080; N-acetyltransferase activity |
Orthologs (automatic annotation)
| TAIR | AT2G23060 : Acyl-CoA N-acyltransferases (NAT) superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g02540.1 : HLS, putative, expressed |
| MaizeGDB (Corn) | Zm00025a044904 |
| Brachypodium | PNT74088 |
| Barley | HORVU5Hr1G097440.3 , HORVU5Hr1G097440.1 , HORVU5Hr1G097440.7 , HORVU5Hr1G097440.6 , HORVU5Hr1G097440.5 , HORVU5Hr1G097440.4 |
| Wheat | TraesCS5D02G411300 , TraesCS5B02G405900 , TraesCS5A02G401100 |
| Populus | - |
JBrowse
| Sobic.002G011400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G026300 | heat shock protein 18.2(PubMedID : 26465154)@hsp20/alpha crystallin family protein, putative, expressed | K13993: HSP20 family protein |
| 2 | Sobic.003G131000 | expressed protein | - |
| 3 | Sobic.010G276400 | "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed | K02291: 15-cis-phytoene synthase |
| 4 | Sobic.001G068400 | - | - |
| 5 | Sobic.003G199800 | expressed protein | - |
| 6 | Sobic.010G038500 | GDSL-like lipase/acylhydrolase, putative, expressed | - |
| 7 | Sobic.001G198800 | -(PubMedID : 26465154)@invertase/pectin methylesterase inhibitor family protein, putative, expressed | - |
| 8 | Sobic.001G338500 | ACT domain containing protein, expressed | - |
| 9 | Sobic.004G046850 | - | - |
| 10 | Sobic.002G218100 | spermidine synthase, putative, expressed | K18787: thermospermine synthase |
| 11 | Sobic.008G021300 | Unnamed(PubMedID : 24676859)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@FHA domain containing protein, putative, expressed | - |
| 12 | Sobic.010G109500 | expressed protein | - |
| 13 | Sobic.004G283100 | -(PubMedID : 26465154)@expressed protein | - |
| 14 | Sobic.002G098800 | peroxiredoxin, putative, expressed | - |
| 15 | Sobic.002G040100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- | - |
| 16 | Sobic.008G081200 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptide transporter PTR3-A, putative, expressed | - |
| 17 | Sobic.003G310400 | polyphenol oxidase, putative, expressed | K00422: polyphenol oxidase |
| 18 | Sobic.007G171600 | Ser/Thr protein phosphatase family protein, putative, expressed | K01517: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase |
| 19 | Sobic.001G338700 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 20 | Sobic.010G019700 | cytochrome P450 86A1, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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