Gene annotation
| Transcriptome id | Sobic.002G218100.1 |
|---|---|
| Synonym | Sb02g025980, ACL5 |
| Functional annotation | spermidine synthase, putative, expressed |
| UniProt | A0A1B6QCT3 |
| Pfam | PF01564 |
| Panther DB | PTHR11558 PTHR11558:SF26 |
| NCBI CDD | KOG1562; Spermidine synthase |
| KEGG Orthology | K18787; thermospermine synthase |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT5G19530 : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os02g14190.1 : spermidine synthase, putative, expressed |
| MaizeGDB (Corn) | - |
| Brachypodium | KQJ94191 , KQJ94193 , KQJ94192 , PNT66257 , PNT66256 |
| Barley | - |
| Wheat | TraesCS4A02G398300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G338700 | tentative name(PubMedID : 31536532)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 2 | Sobic.004G035500 | -(PubMedID : 26976818)@Involved in photorespiratory pathway(PubMedID : 12887583)@dicarboxylate transporter 3(PubMedID : 27016024)@citrate transporter, putative, expressed | K03319: divalent anion:Na+ symporter, DASS family |
| 3 | Sobic.003G052500 | Photosystem I reaction center subunit XI(PubMedID : 26186930)@Photosystem I subunit L(PubMedID : 29017446)@photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed | K02699: photosystem I subunit XI |
| 4 | Sobic.010G109500 | expressed protein | - |
| 5 | Sobic.001G198800 | -(PubMedID : 26465154)@invertase/pectin methylesterase inhibitor family protein, putative, expressed | - |
| 6 | Sobic.010G276400 | "Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@"Phytoene synthase, chloroplast precursor (Zm)"(PubMedID : 27208977)@carotenoid biosynthesi(PubMedID : 18162592)@phytoene synthase, chloroplast precursor, putative, expressed | K02291: 15-cis-phytoene synthase |
| 7 | Sobic.003G131000 | expressed protein | - |
| 8 | Sobic.007G071500 | photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed | K03541: photosystem II 10kDa protein |
| 9 | Sobic.006G234100 | shikimate/quinate 5-dehydrogenase, putative, expressed | K02492: glutamyl-tRNA reductase |
| 10 | Sobic.008G038300 | uncharacterized protein ycf53, putative, expressed | - |
| 11 | Sobic.004G343300 | -(PubMedID : 26465154)@unknown(PubMedID : 29017446)@expressed protein | - |
| 12 | Sobic.002G040100 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- | - |
| 13 | Sobic.003G209800 | Chorophyll a/b binding protein 2(PubMedID : 26186930)@Protein chlorophyll a-b binding protein 2 (Os)(PubMedID : 27208977)@chlorophyll A-B binding protein, putative, expressed | K08912: light-harvesting complex II chlorophyll a/b binding protein 1 |
| 14 | Sobic.006G105900 | Glyceraldehyde-3-phosphate dehydrogenase A(PubMedID : 26186930)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@Glyceraldehyde-3-phosphate dehydrogenase (Zm)(PubMedID : 27208977)@glyceraldehyde-3-phosphate dehydrogenase, putative, expressed | K05298: glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) |
| 15 | Sobic.003G359100 | sedoheptulose-bisphosphatase(PubMedID : 26465154)@fructose-1,6-bisphosphatase, putative, expressed | K01100: sedoheptulose-bisphosphatase |
| 16 | Sobic.006G147300 | -(PubMedID : 26465154)@expressed protein | - |
| 17 | Sobic.004G071800 | - | - |
| 18 | Sobic.003G199800 | expressed protein | - |
| 19 | Sobic.004G249800 | expressed protein | - |
| 20 | Sobic.001G274600 | oxidoreductase, aldo/keto reductase family protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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