Gene annotation
Transcriptome id Sobic.009G014200.1
Synonym Sb09g001390
Functional annotation clathrin assembly protein, putative, expressed
UniProt C5YYJ9
Pfam PF07651
Panther DB PTHR22951 PTHR22951:SF23
NCBI CDD KOG0251; Clathrin assembly protein AP180 and related proteins, contain ENTH domain
KEGG Orthology -
Gene Ontology GO:0005543; phospholipid binding


Orthologs (automatic annotation)
TAIR AT2G25430 : epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related
RAP-DB (Rice) LOC_Os05g02140.1 : clathrin assembly protein, putative, expressed
MaizeGDB (Corn) Zm00025a040932
Brachypodium KQK07700
Barley HORVU1Hr1G005290.1 , HORVU1Hr1G005290.3 , HORVU1Hr1G005290.2
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G014200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G462800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
2 Sobic.002G344700 remorin, putative, expressed -
3 Sobic.001G081600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@protein phosphatase 2C, putative, expressed -
4 Sobic.002G197600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@TKL_IRAK_DUF26-lg.2 - DUF26 kinases have homology to DUF26 containing loci, expressed -
5 Sobic.001G482700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM domain containing protein, putative, expressed K13464: jasmonate ZIM domain-containing protein
6 Sobic.004G084100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
7 Sobic.003G158600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@abscisic stress-ripening, putative, expressed -
8 Sobic.002G367900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aspartic proteinase nepenthesin precursor, putative, expressed -
9 Sobic.007G051800 down-regulated TF in developmental senescence(PubMedID : 27586543)@basic helix-loop-helix family protein, putative, expressed -
10 Sobic.002G401600 glycosyltransferase, putative, expressed -
11 Sobic.001G051600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ATPase, putative, expressed -
12 Sobic.004G281200 chitin-inducible gibberellin-responsive protein 2, putative, expressed -
13 Sobic.001G403600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@DUF538 domain containing protein, putative, expressed -
14 Sobic.004G051166 - -
15 Sobic.007G175900 RING-H2 finger protein ATL2B, putative, expressed -
16 Sobic.008G036000 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@cytochrome P450, putative, expressed -
17 Sobic.006G095600 lipoxygenase (LOX) that catalyzes the first committed step of JA biosynthesis(PubMedID : 31597271)@lipoxygenase protein, putative, expressed K00454: lipoxygenase
18 Sobic.003G131500 VQ domain containing protein, putative, expressed -
19 Sobic.002G294600 aspartic proteinase nepenthesin precursor, putative, expressed -
20 Sobic.007G145700 expressed protein -


Gene co-expression network
sample Sobic009G014200 Sobic009G014200 Sobic001G462800 Sobic001G462800 Sobic009G014200--Sobic001G462800 Sobic002G344700 Sobic002G344700 Sobic009G014200--Sobic002G344700 Sobic001G081600 Sobic001G081600 Sobic009G014200--Sobic001G081600 Sobic002G197600 Sobic002G197600 Sobic009G014200--Sobic002G197600 Sobic001G482700 Sobic001G482700 Sobic009G014200--Sobic001G482700 Sobic004G084100 Sobic004G084100 Sobic009G014200--Sobic004G084100 Sobic003G158600 Sobic003G158600 Sobic009G014200--Sobic003G158600 Sobic002G367900 Sobic002G367900 Sobic009G014200--Sobic002G367900 Sobic007G051800 Sobic007G051800 Sobic009G014200--Sobic007G051800 Sobic001G462800--Sobic001G081600 Sobic002G217100 Sobic002G217100 Sobic001G462800--Sobic002G217100 Sobic002G294600 Sobic002G294600 Sobic001G462800--Sobic002G294600 Sobic001G462800--Sobic002G197600 Sobic001G462800--Sobic002G344700 Sobic001G462800--Sobic002G367900 Sobic006G210300 Sobic006G210300 Sobic001G462800--Sobic006G210300 Sobic007G145700 Sobic007G145700 Sobic001G462800--Sobic007G145700 Sobic004G281200 Sobic004G281200 Sobic001G462800--Sobic004G281200 Sobic004G283300 Sobic004G283300 Sobic002G344700--Sobic004G283300 Sobic002G344700--Sobic001G081600 Sobic002G344700--Sobic001G462800 Sobic006G032200 Sobic006G032200 Sobic002G344700--Sobic006G032200 Sobic004G025000 Sobic004G025000 Sobic002G344700--Sobic004G025000 Sobic009G170100 Sobic009G170100 Sobic002G344700--Sobic009G170100 Sobic002G344700--Sobic004G281200 Sobic002G344700--Sobic006G210300 Sobic002G344700--Sobic002G217100 Sobic001G081600--Sobic001G462800 Sobic001G081600--Sobic002G217100 Sobic001G081600--Sobic006G210300 Sobic001G081600--Sobic004G283300 Sobic001G081600--Sobic002G197600 Sobic001G081600--Sobic004G281200 Sobic001G081600--Sobic002G344700 Sobic001G081600--Sobic004G025000 Sobic001G476400 Sobic001G476400 Sobic001G081600--Sobic001G476400 Sobic002G197600--Sobic001G081600 Sobic002G197600--Sobic002G217100 Sobic002G197600--Sobic001G462800 Sobic002G197600--Sobic004G281200 Sobic002G197600--Sobic006G210300 Sobic002G197600--Sobic002G367900 Sobic008G036000 Sobic008G036000 Sobic002G197600--Sobic008G036000 Sobic004G244100 Sobic004G244100 Sobic002G197600--Sobic004G244100 Sobic004G176900 Sobic004G176900 Sobic002G197600--Sobic004G176900 Sobic004G051166 Sobic004G051166 Sobic001G482700--Sobic004G051166 Sobic002G021300 Sobic002G021300 Sobic001G482700--Sobic002G021300 Sobic004G268700 Sobic004G268700 Sobic001G482700--Sobic004G268700 Sobic001G482700--Sobic008G036000 Sobic001G290400 Sobic001G290400 Sobic001G482700--Sobic001G290400 Sobic001G403600 Sobic001G403600 Sobic001G482700--Sobic001G403600 Sobic001G482700--Sobic001G081600 Sobic001G482700--Sobic002G344700 Sobic001G482700--Sobic002G197600 Sobic006G095600 Sobic006G095600 Sobic004G084100--Sobic006G095600 Sobic004G084100--Sobic003G158600 Sobic004G084100--Sobic008G036000 Sobic007G077001 Sobic007G077001 Sobic004G084100--Sobic007G077001 Sobic001G489600 Sobic001G489600 Sobic004G084100--Sobic001G489600 Sobic002G203000 Sobic002G203000 Sobic004G084100--Sobic002G203000 Sobic001G077700 Sobic001G077700 Sobic004G084100--Sobic001G077700 Sobic009G071800 Sobic009G071800 Sobic004G084100--Sobic009G071800 Sobic010G076600 Sobic010G076600 Sobic004G084100--Sobic010G076600 Sobic003G158600--Sobic004G084100 Sobic003G158600--Sobic008G036000 Sobic003G158600--Sobic001G462800 Sobic003G158600--Sobic002G197600 Sobic003G268700 Sobic003G268700 Sobic003G158600--Sobic003G268700 Sobic003G158600--Sobic002G021300 Sobic003G158600--Sobic007G077001 Sobic003G158600--Sobic006G095600 Sobic004G300300 Sobic004G300300 Sobic003G158600--Sobic004G300300 Sobic002G207300 Sobic002G207300 Sobic002G367900--Sobic002G207300 Sobic004G065900 Sobic004G065900 Sobic002G367900--Sobic004G065900 Sobic003G268900 Sobic003G268900 Sobic002G367900--Sobic003G268900 Sobic001G095700 Sobic001G095700 Sobic002G367900--Sobic001G095700 Sobic002G367900--Sobic001G462800 Sobic002G367900--Sobic002G294600 Sobic002G367900--Sobic002G197600 Sobic002G367900--Sobic006G210300 Sobic002G367900--Sobic004G244100 Sobic007G051800--Sobic001G095700 Sobic001G370600 Sobic001G370600 Sobic007G051800--Sobic001G370600 Sobic007G051800--Sobic001G462800 Sobic007G051800--Sobic002G367900 Sobic007G051800--Sobic003G268900 Sobic006G273800 Sobic006G273800 Sobic007G051800--Sobic006G273800 Sobic007G051800--Sobic002G197600 Sobic007G051800--Sobic006G210300 Sobic007G051800--Sobic004G065900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.