Gene annotation
Transcriptome id Sobic.009G047500.2,Sobic.009G047500.3
Synonym Sb09g004080
Functional annotation E3 ubiquitin-protein ligase SINA-like, putative, expressed
UniProt A0A1Z5R0W5
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF35
NCBI CDD -
KEGG Orthology K04506; E3 ubiquitin-protein ligase SIAH1
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT5G37870 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os05g06070.1 : E3 ubiquitin-protein ligase SINA-like, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G168700 GDSL-like lipase/acylhydrolase, putative, expressed -
2 Sobic.004G003700 Trihelix Family(PubMedID : 24864043)@expressed protein -
3 Sobic.001G143400 Trihelix Family(PubMedID : 24864043)@transcription factor, putative, expressed -
4 Sobic.001G393200 expressed protein -
5 Sobic.005G168400 expressed protein -
6 Sobic.010G235300 acyl-desaturase, chloroplast precursor, putative, expressed K03921: FAB2, SSI2, acyl-[acyl-carrier-protein] desaturase
7 Sobic.001G347201 - -
8 Sobic.006G084201 - -
9 Sobic.006G273600 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@expressed protein -
10 Sobic.008G138000 XH domain containing protein, expressed -
11 Sobic.005G199700 leucine-rich repeat family protein, putative, expressed -
12 Sobic.007G209200 CUP-SHAPED COTYLEDON3, putative, expressed -
13 Sobic.007G170100 male sterility protein 2, putative, expressed K13356: alcohol-forming fatty acyl-CoA reductase
14 Sobic.002G426000 - -
15 Sobic.004G000800 ZOS7-01 - C2H2 zinc finger protein, expressed -
16 Sobic.008G125700 similar to F22D16.26 protein(PubMedID : 29862293)@CSLD4 - cellulose synthase-like family D, expressed K00770: 1,4-beta-D-xylan synthase
17 Sobic.001G286700 homeobox and START domains containing protein, putative, expressed -
18 Sobic.010G070900 keratin, type I cytoskeletal 9, putative, expressed -
19 Sobic.003G010700 plant-specific domain TIGR01568 family protein, expressed -
20 Sobic.009G087700 proline-rich family protein, putative, expressed -


Gene co-expression network
sample Sobic009G047500 Sobic009G047500 Sobic010G168700 Sobic010G168700 Sobic009G047500--Sobic010G168700 Sobic004G003700 Sobic004G003700 Sobic009G047500--Sobic004G003700 Sobic001G143400 Sobic001G143400 Sobic009G047500--Sobic001G143400 Sobic001G393200 Sobic001G393200 Sobic009G047500--Sobic001G393200 Sobic005G168400 Sobic005G168400 Sobic009G047500--Sobic005G168400 Sobic010G235300 Sobic010G235300 Sobic009G047500--Sobic010G235300 Sobic001G347201 Sobic001G347201 Sobic009G047500--Sobic001G347201 Sobic006G084201 Sobic006G084201 Sobic009G047500--Sobic006G084201 Sobic006G273600 Sobic006G273600 Sobic009G047500--Sobic006G273600 Sobic010G168700--Sobic009G047500 Sobic010G168700--Sobic001G143400 Sobic010G168700--Sobic005G168400 Sobic010G168700--Sobic004G003700 Sobic010G070900 Sobic010G070900 Sobic010G168700--Sobic010G070900 Sobic005G199700 Sobic005G199700 Sobic010G168700--Sobic005G199700 Sobic010G276600 Sobic010G276600 Sobic010G168700--Sobic010G276600 Sobic002G426000 Sobic002G426000 Sobic010G168700--Sobic002G426000 Sobic010G168700--Sobic006G273600 Sobic004G003700--Sobic001G143400 Sobic007G209200 Sobic007G209200 Sobic004G003700--Sobic007G209200 Sobic004G003700--Sobic010G168700 Sobic007G147200 Sobic007G147200 Sobic004G003700--Sobic007G147200 Sobic006G221800 Sobic006G221800 Sobic004G003700--Sobic006G221800 Sobic004G003700--Sobic009G047500 Sobic001G101700 Sobic001G101700 Sobic004G003700--Sobic001G101700 Sobic004G003700--Sobic005G168400 Sobic008G138000 Sobic008G138000 Sobic004G003700--Sobic008G138000 Sobic001G143400--Sobic004G003700 Sobic001G143400--Sobic010G168700 Sobic001G143400--Sobic005G168400 Sobic001G143400--Sobic007G147200 Sobic001G143400--Sobic010G070900 Sobic001G143400--Sobic009G047500 Sobic001G143400--Sobic005G199700 Sobic001G143400--Sobic008G138000 Sobic001G143400--Sobic007G209200 Sobic001G393200--Sobic010G168700 Sobic001G393200--Sobic009G047500 Sobic001G393200--Sobic005G168400 Sobic008G125700 Sobic008G125700 Sobic001G393200--Sobic008G125700 Sobic002G360500 Sobic002G360500 Sobic001G393200--Sobic002G360500 Sobic001G393200--Sobic001G347201 Sobic001G393200--Sobic005G199700 Sobic010G119300 Sobic010G119300 Sobic001G393200--Sobic010G119300 Sobic007G180200 Sobic007G180200 Sobic001G393200--Sobic007G180200 Sobic005G168400--Sobic010G168700 Sobic005G168400--Sobic001G143400 Sobic005G168400--Sobic004G003700 Sobic003G319900 Sobic003G319900 Sobic005G168400--Sobic003G319900 Sobic005G168400--Sobic001G393200 Sobic005G168400--Sobic009G047500 Sobic005G168400--Sobic005G199700 Sobic001G379900 Sobic001G379900 Sobic005G168400--Sobic001G379900 Sobic007G152300 Sobic007G152300 Sobic005G168400--Sobic007G152300 Sobic001G286700 Sobic001G286700 Sobic010G235300--Sobic001G286700 Sobic005G009600 Sobic005G009600 Sobic010G235300--Sobic005G009600 Sobic010G235300--Sobic006G273600 Sobic003G027100 Sobic003G027100 Sobic010G235300--Sobic003G027100 Sobic007G170100 Sobic007G170100 Sobic010G235300--Sobic007G170100 Sobic007G165800 Sobic007G165800 Sobic010G235300--Sobic007G165800 Sobic010G166300 Sobic010G166300 Sobic010G235300--Sobic010G166300 Sobic003G178500 Sobic003G178500 Sobic010G235300--Sobic003G178500 Sobic002G363300 Sobic002G363300 Sobic010G235300--Sobic002G363300 Sobic001G347201--Sobic001G393200 Sobic001G347201--Sobic009G047500 Sobic001G347201--Sobic010G168700 Sobic001G347201--Sobic008G125700 Sobic001G347201--Sobic010G119300 Sobic001G347201--Sobic001G143400 Sobic003G084100 Sobic003G084100 Sobic001G347201--Sobic003G084100 Sobic001G347201--Sobic004G003700 Sobic001G347201--Sobic005G168400 Sobic006G084201--Sobic001G143400 Sobic002G268300 Sobic002G268300 Sobic006G084201--Sobic002G268300 Sobic010G220800 Sobic010G220800 Sobic006G084201--Sobic010G220800 Sobic004G000800 Sobic004G000800 Sobic006G084201--Sobic004G000800 Sobic006G084201--Sobic010G168700 Sobic006G084201--Sobic004G003700 Sobic001G313800 Sobic001G313800 Sobic006G084201--Sobic001G313800 Sobic006G084201--Sobic002G426000 Sobic006G084201--Sobic009G047500 Sobic006G273600--Sobic007G170100 Sobic006G273600--Sobic005G009600 Sobic006G273600--Sobic002G363300 Sobic003G010700 Sobic003G010700 Sobic006G273600--Sobic003G010700 Sobic006G273600--Sobic010G235300 Sobic006G273600--Sobic001G286700 Sobic006G273600--Sobic005G199700 Sobic006G273600--Sobic003G027100 Sobic006G273600--Sobic010G166300
Octagon: transcription factors


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