Gene annotation
Transcriptome id Sobic.009G081400.1
Synonym AGP16, Sb09g007150, ATAGP16
Functional annotation expressed protein
UniProt C5YUS6
Pfam PF06376
Panther DB PTHR33374 PTHR33374:SF6
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G46330 : arabinogalactan protein 16
RAP-DB (Rice) LOC_Os01g46850.1 : expressed protein
MaizeGDB (Corn) Zm00025a037584
Brachypodium KQK07012
Barley HORVU5Hr1G026750.1 , HORVU2Hr1G020620.1 , HORVU5Hr1G026800.1 , HORVU0Hr1G002460.1 , HORVU1Hr1G024860.1 , HORVU7Hr1G080850.2 , HORVU7Hr1G080850.3 , HORVU7Hr1G080850.6 , HORVU7Hr1G080850.4
Wheat TraesCS1A02G113100 , TraesCS7A02G343600 , TraesCS1B02G133200 , TraesCS1D02G114500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G070200 - -
2 Sobic.004G198200 expressed protein -
3 Sobic.004G133000 - -
4 Sobic.007G130000 STE_MEKK_ste11_MAP3K.21 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
5 Sobic.004G107900 bZIP transcription factor family protein, putative, expressed -
6 Sobic.004G300600 protein kinase domain containing protein, expressed -
7 Sobic.008G020500 CDC45B - Putative DNA replication initiation protein, expressed K06628: cell division control protein 45
8 Sobic.006G176400 ATROPGEF7/ROPGEF7, putative, expressed -
9 Sobic.004G312700 expressed protein -
10 Sobic.009G227600 aspartyl protease family protein, putative, expressed -
11 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
12 Sobic.001G462100 MFP1 attachment factor 1, putative, expressed -
13 Sobic.003G414400 expressed protein -
14 Sobic.006G076400 histone H3, putative, expressed K11253: histone H3
15 Sobic.004G279601 - K11254: histone H4
16 Sobic.006G018900 avr9/Cf-9 rapidly elicited protein 137, putative, expressed -
17 Sobic.009G190400 expressed protein -
18 Sobic.001G284900 expressed protein -
19 Sobic.004G205300 Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
20 Sobic.003G040100 PHD-finger domain containing protein, putative, expressed K11380: NuA3 HAT complex component NTO1


Gene co-expression network
sample Sobic009G081400 Sobic009G081400 Sobic001G070200 Sobic001G070200 Sobic009G081400--Sobic001G070200 Sobic004G198200 Sobic004G198200 Sobic009G081400--Sobic004G198200 Sobic004G133000 Sobic004G133000 Sobic009G081400--Sobic004G133000 Sobic007G130000 Sobic007G130000 Sobic009G081400--Sobic007G130000 Sobic004G107900 Sobic004G107900 Sobic009G081400--Sobic004G107900 Sobic004G300600 Sobic004G300600 Sobic009G081400--Sobic004G300600 Sobic008G020500 Sobic008G020500 Sobic009G081400--Sobic008G020500 Sobic006G176400 Sobic006G176400 Sobic009G081400--Sobic006G176400 Sobic004G312700 Sobic004G312700 Sobic009G081400--Sobic004G312700 Sobic001G070200--Sobic004G198200 Sobic006G155900 Sobic006G155900 Sobic001G070200--Sobic006G155900 Sobic003G414400 Sobic003G414400 Sobic001G070200--Sobic003G414400 Sobic001G070200--Sobic006G176400 Sobic001G070200--Sobic009G081400 Sobic010G215300 Sobic010G215300 Sobic001G070200--Sobic010G215300 Sobic001G070200--Sobic004G133000 Sobic001G070200--Sobic008G020500 Sobic009G190400 Sobic009G190400 Sobic001G070200--Sobic009G190400 Sobic004G198200--Sobic008G020500 Sobic004G198200--Sobic006G155900 Sobic004G198200--Sobic009G190400 Sobic003G040100 Sobic003G040100 Sobic004G198200--Sobic003G040100 Sobic004G198200--Sobic001G070200 Sobic004G198200--Sobic007G130000 Sobic001G494300 Sobic001G494300 Sobic004G198200--Sobic001G494300 Sobic004G198200--Sobic003G414400 Sobic001G427400 Sobic001G427400 Sobic004G198200--Sobic001G427400 Sobic004G133000--Sobic006G176400 Sobic004G133000--Sobic001G070200 Sobic003G286400 Sobic003G286400 Sobic004G133000--Sobic003G286400 Sobic002G390600 Sobic002G390600 Sobic004G133000--Sobic002G390600 Sobic004G133000--Sobic009G081400 Sobic010G234900 Sobic010G234900 Sobic004G133000--Sobic010G234900 Sobic001G397700 Sobic001G397700 Sobic004G133000--Sobic001G397700 Sobic004G133000--Sobic004G198200 Sobic004G133000--Sobic004G107900 Sobic007G130000--Sobic004G198200 Sobic007G130000--Sobic001G427400 Sobic007G130000--Sobic008G020500 Sobic005G056800 Sobic005G056800 Sobic007G130000--Sobic005G056800 Sobic007G130000--Sobic001G494300 Sobic007G130000--Sobic006G155900 Sobic007G130000--Sobic003G040100 Sobic002G380700 Sobic002G380700 Sobic007G130000--Sobic002G380700 Sobic001G284900 Sobic001G284900 Sobic007G130000--Sobic001G284900 Sobic006G018900 Sobic006G018900 Sobic004G107900--Sobic006G018900 Sobic001G462100 Sobic001G462100 Sobic004G107900--Sobic001G462100 Sobic001G005000 Sobic001G005000 Sobic004G107900--Sobic001G005000 Sobic004G249700 Sobic004G249700 Sobic004G107900--Sobic004G249700 Sobic010G014300 Sobic010G014300 Sobic004G107900--Sobic010G014300 Sobic004G107900--Sobic001G397700 Sobic001G239400 Sobic001G239400 Sobic004G107900--Sobic001G239400 Sobic006G166700 Sobic006G166700 Sobic004G107900--Sobic006G166700 Sobic004G107900--Sobic004G300600 Sobic004G121200 Sobic004G121200 Sobic004G300600--Sobic004G121200 Sobic004G300600--Sobic004G107900 Sobic009G008300 Sobic009G008300 Sobic004G300600--Sobic009G008300 Sobic007G192300 Sobic007G192300 Sobic004G300600--Sobic007G192300 Sobic004G300600--Sobic009G081400 Sobic004G300600--Sobic004G249700 Sobic004G300600--Sobic004G312700 Sobic004G300600--Sobic001G462100 Sobic004G300600--Sobic001G239400 Sobic008G020500--Sobic004G198200 Sobic008G020500--Sobic003G040100 Sobic008G020500--Sobic006G155900 Sobic008G020500--Sobic001G494300 Sobic008G020500--Sobic009G190400 Sobic008G020500--Sobic007G130000 Sobic008G020500--Sobic001G070200 Sobic001G331100 Sobic001G331100 Sobic008G020500--Sobic001G331100 Sobic004G156600 Sobic004G156600 Sobic008G020500--Sobic004G156600 Sobic006G176400--Sobic004G133000 Sobic006G176400--Sobic001G070200 Sobic009G195600 Sobic009G195600 Sobic006G176400--Sobic009G195600 Sobic006G176400--Sobic005G056800 Sobic006G176400--Sobic003G414400 Sobic006G176400--Sobic010G215300 Sobic006G176400--Sobic001G284900 Sobic006G176400--Sobic006G155900 Sobic006G176400--Sobic004G198200 Sobic004G312700--Sobic004G198200 Sobic004G312700--Sobic004G300600 Sobic004G168800 Sobic004G168800 Sobic004G312700--Sobic004G168800 Sobic004G312700--Sobic009G081400 Sobic004G312700--Sobic007G130000 Sobic004G312700--Sobic001G427400 Sobic004G312700--Sobic001G070200 Sobic004G312700--Sobic009G190400 Sobic004G312700--Sobic003G414400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.