Gene annotation
Transcriptome id Sobic.006G176400.1,Sobic.006G176400.2
Synonym Sb06g025120, ROPGEF3, ATROPGEF3
Functional annotation ATROPGEF7/ROPGEF7, putative, expressed
UniProt C5YDM8 , A0A1Z5REK3
Pfam PF03759
Panther DB PTHR33101 PTHR33101:SF7
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005089; Rho guanyl-nucleotide exchange factor activity


Orthologs (automatic annotation)
TAIR AT4G00460 : RHO guanyl-nucleotide exchange factor 3
RAP-DB (Rice) LOC_Os04g47170.1 : ATROPGEF7/ROPGEF7, putative, expressed
MaizeGDB (Corn) Zm00025a003277 , Zm00025a047994 , Zm00025a010245 , Zm00025a037192
Brachypodium KQJ97684 , KQJ97725 , PNT71128 , KQJ94354 , KQJ97727 , KQJ97726 , PNT71127 , KQK05954 , PNT61636 , KQJ91296
Barley HORVU3Hr1G085680.12 , HORVU3Hr1G085680.13 , HORVU3Hr1G085680.10 , HORVU3Hr1G085680.11 , HORVU3Hr1G085680.14 , HORVU2Hr1G096430.6 , HORVU2Hr1G096430.4 , HORVU2Hr1G096430.5 , HORVU2Hr1G096430.2 , HORVU2Hr1G096430.3 , HORVU2Hr1G096430.9 , HORVU1Hr1G053350.9 , HORVU1Hr1G053350.8 , HORVU1Hr1G053350.7 , HORVU1Hr1G053350.6 , HORVU1Hr1G053350.5 , HORVU1Hr1G053350.4 , HORVU1Hr1G072910.10 , HORVU1Hr1G072910.11 , HORVU1Hr1G072910.14 , HORVU3Hr1G085680.6 , HORVU3Hr1G085680.7 , HORVU2Hr1G096430.18 , HORVU2Hr1G096430.19 , HORVU2Hr1G096430.14 , HORVU2Hr1G096430.15 , HORVU2Hr1G096430.16 , HORVU2Hr1G096430.17 , HORVU2Hr1G096430.10 , HORVU2Hr1G096430.11 , HORVU2Hr1G096430.12 , HORVU2Hr1G096430.13 , HORVU1Hr1G072910.1 , HORVU1Hr1G072910.2 , HORVU1Hr1G072910.3 , HORVU1Hr1G072910.6 , HORVU1Hr1G072910.7 , HORVU1Hr1G072910.8 , HORVU1Hr1G072910.9 , HORVU3Hr1G085680.1 , HORVU3Hr1G085680.2 , HORVU3Hr1G085680.3 , HORVU3Hr1G085680.8 , HORVU3Hr1G085680.9 , HORVU6Hr1G092860.5 , HORVU6Hr1G092860.4 , HORVU6Hr1G092860.7 , HORVU6Hr1G092860.6 , HORVU6Hr1G092860.1 , HORVU6Hr1G092860.3 , HORVU6Hr1G092860.2
Wheat TraesCS1B02G222700 , TraesCS1D02G211900 , TraesCS2A02G408100 , TraesCS3A02G364400 , TraesCS1A02G208700 , TraesCS2D02G405400 , TraesCS1A02G280900 , TraesCS1A02G280900 , TraesCS2B02G426300 , TraesCS1D02G280000 , TraesCS1B02G289900 , TraesCS3B02G396500 , TraesCS3D02G357800 , TraesCS3D02G357800 , TraesCS3D02G357800 , TraesCS3D02G357800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G133000 - -
2 Sobic.001G070200 - -
3 Sobic.009G195600 ras-related protein, putative, expressed K04392: Ras-related C3 botulinum toxin substrate 1
4 Sobic.005G056800 FHA domain containing protein, putative, expressed -
5 Sobic.003G414400 expressed protein -
6 Sobic.010G215300 cyclin-dependent kinase B2-1, putative, expressed K07760: cyclin-dependent kinase
7 Sobic.001G284900 expressed protein -
8 Sobic.006G155900 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
9 Sobic.004G198200 expressed protein -
10 Sobic.004G313200 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
11 Sobic.010G234900 armadillo/beta-catenin repeat family protein, putative, expressed -
12 Sobic.001G098900 syntaxin-related protein, putative, expressed K08486: syntaxin 1B/2/3
13 Sobic.003G047200 expressed protein -
14 Sobic.007G000500 HMG1/2, putative, expressed -
15 Sobic.001G540900 tubulin/FtsZ domain containing protein, putative, expressed K07375: tubulin beta
16 Sobic.010G209800 methyladenine glycosylase, putative, expressed K01246: DNA-3-methyladenine glycosylase I
17 Sobic.009G025400 myosin heavy chain-related, putative, expressed -
18 Sobic.001G494300 DNA topoisomerase 3 protein, putative, expressed K03165: DNA topoisomerase III
19 Sobic.010G202100 expressed protein -
20 Sobic.001G140600 expressed protein -


Gene co-expression network
sample Sobic006G176400 Sobic006G176400 Sobic004G133000 Sobic004G133000 Sobic006G176400--Sobic004G133000 Sobic001G070200 Sobic001G070200 Sobic006G176400--Sobic001G070200 Sobic009G195600 Sobic009G195600 Sobic006G176400--Sobic009G195600 Sobic005G056800 Sobic005G056800 Sobic006G176400--Sobic005G056800 Sobic003G414400 Sobic003G414400 Sobic006G176400--Sobic003G414400 Sobic010G215300 Sobic010G215300 Sobic006G176400--Sobic010G215300 Sobic001G284900 Sobic001G284900 Sobic006G176400--Sobic001G284900 Sobic006G155900 Sobic006G155900 Sobic006G176400--Sobic006G155900 Sobic004G198200 Sobic004G198200 Sobic006G176400--Sobic004G198200 Sobic004G133000--Sobic006G176400 Sobic004G133000--Sobic001G070200 Sobic003G286400 Sobic003G286400 Sobic004G133000--Sobic003G286400 Sobic002G390600 Sobic002G390600 Sobic004G133000--Sobic002G390600 Sobic009G081400 Sobic009G081400 Sobic004G133000--Sobic009G081400 Sobic010G234900 Sobic010G234900 Sobic004G133000--Sobic010G234900 Sobic001G397700 Sobic001G397700 Sobic004G133000--Sobic001G397700 Sobic004G133000--Sobic004G198200 Sobic004G107900 Sobic004G107900 Sobic004G133000--Sobic004G107900 Sobic001G070200--Sobic004G198200 Sobic001G070200--Sobic006G155900 Sobic001G070200--Sobic003G414400 Sobic001G070200--Sobic006G176400 Sobic001G070200--Sobic009G081400 Sobic001G070200--Sobic010G215300 Sobic001G070200--Sobic004G133000 Sobic008G020500 Sobic008G020500 Sobic001G070200--Sobic008G020500 Sobic009G190400 Sobic009G190400 Sobic001G070200--Sobic009G190400 Sobic007G162000 Sobic007G162000 Sobic009G195600--Sobic007G162000 Sobic010G202100 Sobic010G202100 Sobic009G195600--Sobic010G202100 Sobic009G195600--Sobic006G176400 Sobic007G019600 Sobic007G019600 Sobic009G195600--Sobic007G019600 Sobic003G047200 Sobic003G047200 Sobic009G195600--Sobic003G047200 Sobic009G257900 Sobic009G257900 Sobic009G195600--Sobic009G257900 Sobic002G202500 Sobic002G202500 Sobic009G195600--Sobic002G202500 Sobic003G373900 Sobic003G373900 Sobic009G195600--Sobic003G373900 Sobic002G035500 Sobic002G035500 Sobic009G195600--Sobic002G035500 Sobic005G056800--Sobic001G284900 Sobic009G025400 Sobic009G025400 Sobic005G056800--Sobic009G025400 Sobic004G271300 Sobic004G271300 Sobic005G056800--Sobic004G271300 Sobic005G056800--Sobic003G047200 Sobic005G056800--Sobic003G414400 Sobic005G056800--Sobic010G215300 Sobic006G112800 Sobic006G112800 Sobic005G056800--Sobic006G112800 Sobic001G540900 Sobic001G540900 Sobic005G056800--Sobic001G540900 Sobic007G130000 Sobic007G130000 Sobic005G056800--Sobic007G130000 Sobic003G414400--Sobic001G284900 Sobic003G414400--Sobic010G215300 Sobic001G098900 Sobic001G098900 Sobic003G414400--Sobic001G098900 Sobic003G414400--Sobic010G202100 Sobic003G414400--Sobic003G047200 Sobic010G234800 Sobic010G234800 Sobic003G414400--Sobic010G234800 Sobic003G414400--Sobic006G155900 Sobic003G414400--Sobic001G070200 Sobic003G414400--Sobic004G271300 Sobic010G215300--Sobic001G098900 Sobic010G215300--Sobic010G234800 Sobic010G215300--Sobic003G414400 Sobic010G215300--Sobic010G202100 Sobic001G140600 Sobic001G140600 Sobic010G215300--Sobic001G140600 Sobic010G215300--Sobic003G047200 Sobic008G114500 Sobic008G114500 Sobic010G215300--Sobic008G114500 Sobic010G215300--Sobic001G540900 Sobic010G215300--Sobic001G284900 Sobic001G284900--Sobic003G414400 Sobic001G284900--Sobic005G056800 Sobic001G284900--Sobic003G047200 Sobic001G284900--Sobic010G215300 Sobic001G284900--Sobic004G271300 Sobic001G284900--Sobic009G025400 Sobic001G427400 Sobic001G427400 Sobic001G284900--Sobic001G427400 Sobic010G017400 Sobic010G017400 Sobic001G284900--Sobic010G017400 Sobic001G284900--Sobic001G098900 Sobic006G155900--Sobic009G190400 Sobic006G155900--Sobic004G198200 Sobic003G040100 Sobic003G040100 Sobic006G155900--Sobic003G040100 Sobic001G494300 Sobic001G494300 Sobic006G155900--Sobic001G494300 Sobic006G155900--Sobic008G020500 Sobic006G155900--Sobic003G047200 Sobic006G155900--Sobic003G414400 Sobic006G155900--Sobic001G070200 Sobic001G331100 Sobic001G331100 Sobic006G155900--Sobic001G331100 Sobic004G198200--Sobic008G020500 Sobic004G198200--Sobic006G155900 Sobic004G198200--Sobic009G190400 Sobic004G198200--Sobic003G040100 Sobic004G198200--Sobic001G070200 Sobic004G198200--Sobic007G130000 Sobic004G198200--Sobic001G494300 Sobic004G198200--Sobic003G414400 Sobic004G198200--Sobic001G427400
Octagon: transcription factors


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