Gene annotation
Transcriptome id Sobic.009G171750.1
Synonym -
Functional annotation -
UniProt C5YZQ6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G350500 pectinesterase, putative, expressed K01051: pectinesterase
2 Sobic.001G443600 expressed protein -
3 Sobic.009G171800 aldose 1-epimerase, putative, expressed -
4 Sobic.003G091700 seven in absentia protein family protein, expressed -
5 Sobic.001G455900 "qGL3-2/qLGY3(Ortholog in rice:Yu et al., 2018/Liu et al., 2018)"(PubMedID : 31659846)@determinacy of the spikelet meristem and determining the identity of lemmas and paleas(PubMedID : 15208396)@OsMADS1 - MADS-box family gene with MIKCc type-box, expressed -
6 Sobic.003G238800 GDSL-like lipase/acylhydrolase, putative, expressed -
7 Sobic.006G271600 RNA recognition motif containing protein, putative, expressed K13126: polyadenylate-binding protein
8 Sobic.009G219500 dehydrogenase/reductase SDR family member 2, putative, expressed K11147: dehydrogenase/reductase SDR family member 4
9 Sobic.001G071600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
10 Sobic.010G247000 expressed protein -
11 Sobic.005G141200 plant protein of unknown function domain containing protein, expressed -
12 Sobic.003G231000 SbDFR2 expression was not detectable in the seedlings of either sorghum cultivar under our experimental conditions.(PubMedID : 20529887)@dihydroflavonol-4-reductase, putative, expressed K13082: bifunctional dihydroflavonol 4-reductase/flavanone 4-reductase
13 Sobic.008G005400 cysteine-rich receptor-like protein kinase 4 precursor, putative, expressed K04730: interleukin-1 receptor-associated kinase 1
14 Sobic.005G166500 Homologous to EPF/EPFL genes in Arabidopsis. Modelling of protein structure.(PubMedID : 23755192)@allergen-related, putative, expressed -
15 Sobic.004G277501 - -
16 Sobic.003G046400 transcriptional corepressor LEUNIG, putative, expressed -
17 Sobic.006G006200 expressed protein -
18 Sobic.004G218100 Protein octadecanal decarbonylase CER1 (Os)(PubMedID : 27208977)@WAX2, putative, expressed K15404: K15404, aldehyde decarbonylase
19 Sobic.001G137600 ankyrin, putative, expressed -
20 Sobic.005G131000 expressed protein -


Gene co-expression network
sample Sobic009G171750 Sobic009G171750 Sobic004G350500 Sobic004G350500 Sobic009G171750--Sobic004G350500 Sobic001G443600 Sobic001G443600 Sobic009G171750--Sobic001G443600 Sobic009G171800 Sobic009G171800 Sobic009G171750--Sobic009G171800 Sobic003G091700 Sobic003G091700 Sobic009G171750--Sobic003G091700 Sobic001G455900 Sobic001G455900 Sobic009G171750--Sobic001G455900 Sobic003G238800 Sobic003G238800 Sobic009G171750--Sobic003G238800 Sobic006G271600 Sobic006G271600 Sobic009G171750--Sobic006G271600 Sobic009G219500 Sobic009G219500 Sobic009G171750--Sobic009G219500 Sobic001G071600 Sobic001G071600 Sobic009G171750--Sobic001G071600 Sobic003G231000 Sobic003G231000 Sobic004G350500--Sobic003G231000 Sobic007G036200 Sobic007G036200 Sobic004G350500--Sobic007G036200 Sobic002G066350 Sobic002G066350 Sobic004G350500--Sobic002G066350 Sobic004G350500--Sobic003G238800 Sobic005G131000 Sobic005G131000 Sobic004G350500--Sobic005G131000 Sobic004G254300 Sobic004G254300 Sobic004G350500--Sobic004G254300 Sobic002G023500 Sobic002G023500 Sobic004G350500--Sobic002G023500 Sobic002G268300 Sobic002G268300 Sobic004G350500--Sobic002G268300 Sobic009G111301 Sobic009G111301 Sobic004G350500--Sobic009G111301 Sobic001G163732 Sobic001G163732 Sobic001G443600--Sobic001G163732 Sobic006G006200 Sobic006G006200 Sobic001G443600--Sobic006G006200 Sobic004G277501 Sobic004G277501 Sobic001G443600--Sobic004G277501 Sobic004G316100 Sobic004G316100 Sobic001G443600--Sobic004G316100 Sobic003G232800 Sobic003G232800 Sobic001G443600--Sobic003G232800 Sobic001G443600--Sobic003G091700 Sobic001G331700 Sobic001G331700 Sobic001G443600--Sobic001G331700 Sobic001G227700 Sobic001G227700 Sobic001G443600--Sobic001G227700 Sobic003G175300 Sobic003G175300 Sobic001G443600--Sobic003G175300 Sobic010G247000 Sobic010G247000 Sobic009G171800--Sobic010G247000 Sobic009G171800--Sobic001G455900 Sobic001G143400 Sobic001G143400 Sobic009G171800--Sobic001G143400 Sobic006G163300 Sobic006G163300 Sobic009G171800--Sobic006G163300 Sobic003G046400 Sobic003G046400 Sobic009G171800--Sobic003G046400 Sobic003G010700 Sobic003G010700 Sobic009G171800--Sobic003G010700 Sobic010G070900 Sobic010G070900 Sobic009G171800--Sobic010G070900 Sobic001G464800 Sobic001G464800 Sobic009G171800--Sobic001G464800 Sobic010G077000 Sobic010G077000 Sobic009G171800--Sobic010G077000 Sobic003G091700--Sobic005G131000 Sobic010G048500 Sobic010G048500 Sobic003G091700--Sobic010G048500 Sobic003G091700--Sobic002G268300 Sobic004G000800 Sobic004G000800 Sobic003G091700--Sobic004G000800 Sobic006G156200 Sobic006G156200 Sobic003G091700--Sobic006G156200 Sobic003G091700--Sobic003G231000 Sobic002G205000 Sobic002G205000 Sobic003G091700--Sobic002G205000 Sobic003G091700--Sobic002G066350 Sobic003G091700--Sobic003G232800 Sobic001G455900--Sobic003G046400 Sobic001G455900--Sobic006G163300 Sobic007G033700 Sobic007G033700 Sobic001G455900--Sobic007G033700 Sobic009G243000 Sobic009G243000 Sobic001G455900--Sobic009G243000 Sobic001G455900--Sobic010G247000 Sobic001G455900--Sobic006G271600 Sobic001G455900--Sobic001G071600 Sobic001G137600 Sobic001G137600 Sobic001G455900--Sobic001G137600 Sobic001G455900--Sobic010G070900 Sobic003G238800--Sobic002G268300 Sobic002G344201 Sobic002G344201 Sobic003G238800--Sobic002G344201 Sobic003G238800--Sobic003G231000 Sobic003G238800--Sobic004G350500 Sobic003G238800--Sobic004G254300 Sobic001G313800 Sobic001G313800 Sobic003G238800--Sobic001G313800 Sobic010G169200 Sobic010G169200 Sobic003G238800--Sobic010G169200 Sobic001G456000 Sobic001G456000 Sobic003G238800--Sobic001G456000 Sobic010G220800 Sobic010G220800 Sobic003G238800--Sobic010G220800 Sobic006G271600--Sobic001G071600 Sobic010G194600 Sobic010G194600 Sobic006G271600--Sobic010G194600 Sobic003G117200 Sobic003G117200 Sobic006G271600--Sobic003G117200 Sobic006G271600--Sobic009G243000 Sobic003G300000 Sobic003G300000 Sobic006G271600--Sobic003G300000 Sobic002G078900 Sobic002G078900 Sobic006G271600--Sobic002G078900 Sobic006G271600--Sobic003G046400 Sobic010G183800 Sobic010G183800 Sobic006G271600--Sobic010G183800 Sobic003G088600 Sobic003G088600 Sobic006G271600--Sobic003G088600 Sobic009G219500--Sobic003G088600 Sobic009G219500--Sobic006G271600 Sobic004G101200 Sobic004G101200 Sobic009G219500--Sobic004G101200 Sobic009G219500--Sobic010G194600 Sobic001G137800 Sobic001G137800 Sobic009G219500--Sobic001G137800 Sobic003G129200 Sobic003G129200 Sobic009G219500--Sobic003G129200 Sobic001G086400 Sobic001G086400 Sobic009G219500--Sobic001G086400 Sobic008G137700 Sobic008G137700 Sobic009G219500--Sobic008G137700 Sobic009G219500--Sobic003G117200 Sobic001G071600--Sobic006G271600 Sobic001G071600--Sobic003G046400 Sobic001G071600--Sobic010G183800 Sobic001G071600--Sobic002G078900 Sobic009G048300 Sobic009G048300 Sobic001G071600--Sobic009G048300 Sobic001G071600--Sobic009G243000 Sobic001G071600--Sobic001G456000 Sobic001G071600--Sobic003G300000 Sobic004G281000 Sobic004G281000 Sobic001G071600--Sobic004G281000
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.