Gene annotation
Transcriptome id Sobic.009G185100.1
Synonym Sb09g024465
Functional annotation seven in absentia protein family domain containing protein, expressed
UniProt -
Pfam PF03145
Panther DB PTHR10315 PTHR10315:SF29
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT3G61790 : Protein with RING/U-box and TRAF-like domains
RAP-DB (Rice) LOC_Os03g24040.1 : seven in absentia protein family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a002526
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G022100 OsFBX212 - F-box domain containing protein, expressed -
2 Sobic.002G022200 OsFBL33 - F-box domain and LRR containing protein, expressed -
3 Sobic.002G016100 OsFBD13 - F-box and FBD domain containing protein, expressed -
4 Sobic.002G103100 - -
5 Sobic.007G141380 - -
6 Sobic.009G260350 - -
7 Sobic.003G164950 - -
8 Sobic.001G337350 - -
9 Sobic.005G170900 OsFBDUF64 - F-box and DUF domain containing protein -
10 Sobic.002G021700 OsFBX234 - F-box domain containing protein, expressed -
11 Sobic.002G048900 - -
12 Sobic.004G230700 ulp1 protease family, C-terminal catalytic domain containing protein, expressed -
13 Sobic.007G198400 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.004G188000 histone H3, putative, expressed K11253: histone H3
15 Sobic.010G170500 Leucine Rich Repeat family protein, expressed -
16 Sobic.001G261513 - -
17 Sobic.007G001200 vesicle-associated membrane protein, putative, expressed K08515: vesicle-associated membrane protein 7
18 Sobic.004G133900 - -
19 Sobic.010G157300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.003G060500 T-complex protein, putative, expressed K09494: T-complex protein 1 subunit beta


Gene co-expression network
sample Sobic009G185100 Sobic009G185100 Sobic002G022100 Sobic002G022100 Sobic009G185100--Sobic002G022100 Sobic002G022200 Sobic002G022200 Sobic009G185100--Sobic002G022200 Sobic002G016100 Sobic002G016100 Sobic009G185100--Sobic002G016100 Sobic002G103100 Sobic002G103100 Sobic009G185100--Sobic002G103100 Sobic007G141380 Sobic007G141380 Sobic009G185100--Sobic007G141380 Sobic009G260350 Sobic009G260350 Sobic009G185100--Sobic009G260350 Sobic003G164950 Sobic003G164950 Sobic009G185100--Sobic003G164950 Sobic001G337350 Sobic001G337350 Sobic009G185100--Sobic001G337350 Sobic005G170900 Sobic005G170900 Sobic009G185100--Sobic005G170900 Sobic002G048900 Sobic002G048900 Sobic002G022100--Sobic002G048900 Sobic002G022100--Sobic007G141380 Sobic002G022100--Sobic002G016100 Sobic002G022100--Sobic002G103100 Sobic002G022100--Sobic003G164950 Sobic007G198400 Sobic007G198400 Sobic002G022100--Sobic007G198400 Sobic004G230700 Sobic004G230700 Sobic002G022100--Sobic004G230700 Sobic002G022100--Sobic009G185100 Sobic002G022100--Sobic009G260350 Sobic002G021700 Sobic002G021700 Sobic002G022200--Sobic002G021700 Sobic002G022200--Sobic005G170900 Sobic002G022200--Sobic009G185100 Sobic002G389301 Sobic002G389301 Sobic002G022200--Sobic002G389301 Sobic006G011500 Sobic006G011500 Sobic002G022200--Sobic006G011500 Sobic002G022200--Sobic002G022100 Sobic007G026800 Sobic007G026800 Sobic002G022200--Sobic007G026800 Sobic003G170400 Sobic003G170400 Sobic002G022200--Sobic003G170400 Sobic004G213900 Sobic004G213900 Sobic002G022200--Sobic004G213900 Sobic002G016100--Sobic002G022100 Sobic002G016100--Sobic002G103100 Sobic002G016100--Sobic002G048900 Sobic002G016100--Sobic009G260350 Sobic002G016100--Sobic003G164950 Sobic001G236700 Sobic001G236700 Sobic002G016100--Sobic001G236700 Sobic002G016100--Sobic007G198400 Sobic002G016100--Sobic009G185100 Sobic002G016100--Sobic007G141380 Sobic002G103100--Sobic003G164950 Sobic008G089800 Sobic008G089800 Sobic002G103100--Sobic008G089800 Sobic002G103100--Sobic007G198400 Sobic003G418733 Sobic003G418733 Sobic002G103100--Sobic003G418733 Sobic002G103100--Sobic002G022100 Sobic004G188000 Sobic004G188000 Sobic002G103100--Sobic004G188000 Sobic002G118101 Sobic002G118101 Sobic002G103100--Sobic002G118101 Sobic007G202300 Sobic007G202300 Sobic002G103100--Sobic007G202300 Sobic002G408100 Sobic002G408100 Sobic002G103100--Sobic002G408100 Sobic007G141380--Sobic004G230700 Sobic007G141380--Sobic007G198400 Sobic007G141380--Sobic002G022100 Sobic007G141380--Sobic009G260350 Sobic002G237900 Sobic002G237900 Sobic007G141380--Sobic002G237900 Sobic008G105366 Sobic008G105366 Sobic007G141380--Sobic008G105366 Sobic007G141380--Sobic002G408100 Sobic005G219300 Sobic005G219300 Sobic007G141380--Sobic005G219300 Sobic006G072601 Sobic006G072601 Sobic007G141380--Sobic006G072601 Sobic009G260350--Sobic008G105366 Sobic009G260350--Sobic004G230700 Sobic010G057666 Sobic010G057666 Sobic009G260350--Sobic010G057666 Sobic009G260350--Sobic007G141380 Sobic010G033100 Sobic010G033100 Sobic009G260350--Sobic010G033100 Sobic009G260350--Sobic007G198400 Sobic004G038800 Sobic004G038800 Sobic009G260350--Sobic004G038800 Sobic005G007000 Sobic005G007000 Sobic009G260350--Sobic005G007000 Sobic009G260350--Sobic006G072601 Sobic003G164950--Sobic002G103100 Sobic003G164950--Sobic008G089800 Sobic006G056800 Sobic006G056800 Sobic003G164950--Sobic006G056800 Sobic003G164950--Sobic004G188000 Sobic003G164950--Sobic002G022100 Sobic001G284475 Sobic001G284475 Sobic003G164950--Sobic001G284475 Sobic003G164950--Sobic003G418733 Sobic006G061900 Sobic006G061900 Sobic003G164950--Sobic006G061900 Sobic003G164950--Sobic002G118101 Sobic010G170500 Sobic010G170500 Sobic001G337350--Sobic010G170500 Sobic001G337300 Sobic001G337300 Sobic001G337350--Sobic001G337300 Sobic002G310500 Sobic002G310500 Sobic001G337350--Sobic002G310500 Sobic005G208100 Sobic005G208100 Sobic001G337350--Sobic005G208100 Sobic007G148000 Sobic007G148000 Sobic001G337350--Sobic007G148000 Sobic001G184000 Sobic001G184000 Sobic001G337350--Sobic001G184000 Sobic004G181800 Sobic004G181800 Sobic001G337350--Sobic004G181800 Sobic008G140300 Sobic008G140300 Sobic001G337350--Sobic008G140300 Sobic004G304300 Sobic004G304300 Sobic001G337350--Sobic004G304300 Sobic005G170900--Sobic002G022200 Sobic005G158100 Sobic005G158100 Sobic005G170900--Sobic005G158100 Sobic003G261733 Sobic003G261733 Sobic005G170900--Sobic003G261733 Sobic005G170900--Sobic002G021700 Sobic005G170900--Sobic004G213900 Sobic005G170900--Sobic003G170400 Sobic005G170900--Sobic002G103100 Sobic009G121400 Sobic009G121400 Sobic005G170900--Sobic009G121400 Sobic005G170900--Sobic009G185100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.