Gene annotation
Transcriptome id Sobic.003G060500.1
Synonym Sb03g005190
Functional annotation T-complex protein, putative, expressed
UniProt C5XP67
Pfam PF00118
Panther DB PTHR11353 PTHR11353:SF23
NCBI CDD -
KEGG Orthology K09494; T-complex protein 1 subunit beta
Gene Ontology GO:0005524; ATP binding


Orthologs (automatic annotation)
TAIR AT5G20890 : TCP-1/cpn60 chaperonin family protein
RAP-DB (Rice) LOC_Os03g42220.1 : T-complex protein, putative, expressed
MaizeGDB (Corn) Zm00025a023919 , Zm00025a035367
Brachypodium KQK04869
Barley HORVU5Hr1G085530.10 , HORVU5Hr1G085530.11 , HORVU4Hr1G068820.7 , HORVU4Hr1G068820.8 , HORVU4Hr1G068820.2 , HORVU4Hr1G068820.3 , HORVU4Hr1G068820.6 , HORVU4Hr1G068820.4 , HORVU4Hr1G068820.1 , HORVU4Hr1G068820.5 , HORVU5Hr1G085530.8 , HORVU5Hr1G085530.9 , HORVU5Hr1G085530.4 , HORVU5Hr1G085530.5 , HORVU5Hr1G085530.6 , HORVU5Hr1G085530.7 , HORVU5Hr1G085530.1 , HORVU5Hr1G085530.2 , HORVU5Hr1G085530.3
Wheat TraesCS5A02G342600 , TraesCS4B02G250200 , TraesCS5B02G341900 , TraesCS4A02G054800 , TraesCS5D02G347400 , TraesCS4D02G250100
Populus PNT31341 , PNT31340 , PNT31343 , PNT31342 , PNT31344


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G068800 DNA directed RNA polymerase, 7 kDa subunit domain containing protein, expressed K03009: RPB12, DNA-directed RNA polymerases I, II, and III subunit RPABC4
2 Sobic.009G228800 dolichol phosphate-mannose biosynthesis regulatory protein, putative, expressed K09658: dolichol phosphate-mannose biosynthesis regulatory protein
3 Sobic.001G073000 expressed protein K09659: dolichol-phosphate mannosyltransferase subunit 3
4 Sobic.004G183501 - -
5 Sobic.007G203700 SNF1-related protein kinase regulatory subunit beta-2, putative, expressed K07199: 5'-AMP-activated protein kinase, regulatory beta subunit
6 Sobic.001G415500 zinc finger, C3HC4 type domain containing protein, expressed K13125: nitric oxide synthase-interacting protein
7 Sobic.001G181700 expressed protein -
8 Sobic.002G178601 - -
9 Sobic.004G235000 methyltransferase, putative, expressed K10770: ALKBH8, alkylated DNA repair protein alkB homolog 8
10 Sobic.003G370900 expressed protein -
11 Sobic.005G003800 ribosomal protein L10, putative, expressed K14815: mRNA turnover protein 4
12 Sobic.004G289800 expressed protein -
13 Sobic.001G007200 HSF-type DNA-binding domain containing protein, expressed K09419: heat shock transcription factor, other eukaryote
14 Sobic.004G049900 ubiquitin family protein, putative, expressed K08770: ubiquitin C
K08770: ubiquitin C
K04551: ubiquitin B
15 Sobic.001G106700 expressed protein -
16 Sobic.010G042100 transcription elongation factor 1, putative, expressed -
17 Sobic.007G166100 no apical meristem protein, putative, expressed -
18 Sobic.002G084500 expressed protein -
19 Sobic.001G461900 vesicle transport protein GOT1B, putative, expressed -
20 Sobic.009G185800 translation initiation factor SUI1, putative, expressed K03113: EIF1, translation initiation factor 1


Gene co-expression network
sample Sobic003G060500 Sobic003G060500 Sobic007G068800 Sobic007G068800 Sobic003G060500--Sobic007G068800 Sobic009G228800 Sobic009G228800 Sobic003G060500--Sobic009G228800 Sobic001G073000 Sobic001G073000 Sobic003G060500--Sobic001G073000 Sobic004G183501 Sobic004G183501 Sobic003G060500--Sobic004G183501 Sobic007G203700 Sobic007G203700 Sobic003G060500--Sobic007G203700 Sobic001G415500 Sobic001G415500 Sobic003G060500--Sobic001G415500 Sobic001G181700 Sobic001G181700 Sobic003G060500--Sobic001G181700 Sobic002G178601 Sobic002G178601 Sobic003G060500--Sobic002G178601 Sobic004G235000 Sobic004G235000 Sobic003G060500--Sobic004G235000 Sobic003G000800 Sobic003G000800 Sobic007G068800--Sobic003G000800 Sobic001G138300 Sobic001G138300 Sobic007G068800--Sobic001G138300 Sobic007G068800--Sobic007G203700 Sobic007G068800--Sobic001G073000 Sobic009G246950 Sobic009G246950 Sobic007G068800--Sobic009G246950 Sobic004G079100 Sobic004G079100 Sobic007G068800--Sobic004G079100 Sobic005G026800 Sobic005G026800 Sobic007G068800--Sobic005G026800 Sobic006G256500 Sobic006G256500 Sobic007G068800--Sobic006G256500 Sobic006G212100 Sobic006G212100 Sobic007G068800--Sobic006G212100 Sobic009G228800--Sobic001G073000 Sobic004G212200 Sobic004G212200 Sobic009G228800--Sobic004G212200 Sobic009G228800--Sobic007G203700 Sobic003G015900 Sobic003G015900 Sobic009G228800--Sobic003G015900 Sobic010G000900 Sobic010G000900 Sobic009G228800--Sobic010G000900 Sobic003G248600 Sobic003G248600 Sobic009G228800--Sobic003G248600 Sobic001G512300 Sobic001G512300 Sobic009G228800--Sobic001G512300 Sobic004G356900 Sobic004G356900 Sobic009G228800--Sobic004G356900 Sobic002G393500 Sobic002G393500 Sobic009G228800--Sobic002G393500 Sobic001G073000--Sobic009G228800 Sobic010G083700 Sobic010G083700 Sobic001G073000--Sobic010G083700 Sobic001G007200 Sobic001G007200 Sobic001G073000--Sobic001G007200 Sobic001G073000--Sobic001G415500 Sobic007G186300 Sobic007G186300 Sobic001G073000--Sobic007G186300 Sobic001G054200 Sobic001G054200 Sobic001G073000--Sobic001G054200 Sobic001G073000--Sobic009G246950 Sobic010G253800 Sobic010G253800 Sobic001G073000--Sobic010G253800 Sobic001G073000--Sobic003G248600 Sobic004G183501--Sobic001G073000 Sobic004G183501--Sobic001G415500 Sobic001G022900 Sobic001G022900 Sobic004G183501--Sobic001G022900 Sobic003G117900 Sobic003G117900 Sobic004G183501--Sobic003G117900 Sobic009G146100 Sobic009G146100 Sobic004G183501--Sobic009G146100 Sobic004G183501--Sobic001G007200 Sobic004G183501--Sobic009G228800 Sobic003G370900 Sobic003G370900 Sobic004G183501--Sobic003G370900 Sobic001G106700 Sobic001G106700 Sobic004G183501--Sobic001G106700 Sobic007G203700--Sobic009G246950 Sobic001G529000 Sobic001G529000 Sobic007G203700--Sobic001G529000 Sobic010G193800 Sobic010G193800 Sobic007G203700--Sobic010G193800 Sobic006G263900 Sobic006G263900 Sobic007G203700--Sobic006G263900 Sobic002G256300 Sobic002G256300 Sobic007G203700--Sobic002G256300 Sobic004G300900 Sobic004G300900 Sobic007G203700--Sobic004G300900 Sobic007G203700--Sobic001G054200 Sobic004G060600 Sobic004G060600 Sobic007G203700--Sobic004G060600 Sobic001G078500 Sobic001G078500 Sobic007G203700--Sobic001G078500 Sobic001G415500--Sobic001G007200 Sobic008G161800 Sobic008G161800 Sobic001G415500--Sobic008G161800 Sobic003G253000 Sobic003G253000 Sobic001G415500--Sobic003G253000 Sobic001G415500--Sobic009G146100 Sobic006G108400 Sobic006G108400 Sobic001G415500--Sobic006G108400 Sobic006G141500 Sobic006G141500 Sobic001G415500--Sobic006G141500 Sobic004G049900 Sobic004G049900 Sobic001G415500--Sobic004G049900 Sobic004G293700 Sobic004G293700 Sobic001G415500--Sobic004G293700 Sobic010G121300 Sobic010G121300 Sobic001G415500--Sobic010G121300 Sobic009G222500 Sobic009G222500 Sobic001G181700--Sobic009G222500 Sobic001G181700--Sobic003G370900 Sobic001G080700 Sobic001G080700 Sobic001G181700--Sobic001G080700 Sobic009G165800 Sobic009G165800 Sobic001G181700--Sobic009G165800 Sobic003G012200 Sobic003G012200 Sobic001G181700--Sobic003G012200 Sobic003G344900 Sobic003G344900 Sobic001G181700--Sobic003G344900 Sobic002G110700 Sobic002G110700 Sobic001G181700--Sobic002G110700 Sobic004G348300 Sobic004G348300 Sobic001G181700--Sobic004G348300 Sobic002G352600 Sobic002G352600 Sobic001G181700--Sobic002G352600 Sobic002G178601--Sobic002G393500 Sobic008G133600 Sobic008G133600 Sobic002G178601--Sobic008G133600 Sobic002G178601--Sobic003G344900 Sobic003G239800 Sobic003G239800 Sobic002G178601--Sobic003G239800 Sobic002G178601--Sobic009G228800 Sobic002G178601--Sobic003G015900 Sobic001G113000 Sobic001G113000 Sobic002G178601--Sobic001G113000 Sobic002G178601--Sobic004G235000 Sobic002G430800 Sobic002G430800 Sobic002G178601--Sobic002G430800 Sobic004G235000--Sobic009G222500 Sobic006G092400 Sobic006G092400 Sobic004G235000--Sobic006G092400 Sobic003G214500 Sobic003G214500 Sobic004G235000--Sobic003G214500 Sobic003G220800 Sobic003G220800 Sobic004G235000--Sobic003G220800 Sobic010G027600 Sobic010G027600 Sobic004G235000--Sobic010G027600 Sobic004G235000--Sobic001G007200 Sobic004G235000--Sobic003G012200 Sobic004G086600 Sobic004G086600 Sobic004G235000--Sobic004G086600 Sobic009G084000 Sobic009G084000 Sobic004G235000--Sobic009G084000
Octagon: transcription factors


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