Gene annotation
Transcriptome id Sobic.009G198700.1
Synonym Sb09g025640, ATRABA1B, RABA1b, RAB11
Functional annotation ras-related protein, putative, expressed
UniProt C6JRH5 , C5Z0Z5
Pfam PF00025
Panther DB PTHR24073 PTHR24073:SF544
NCBI CDD KOG0087; GTPase Rab11/YPT3, small G protein superfamily
KEGG Orthology K07904; Ras-related protein Rab-11A
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G16920 : RAB GTPase homolog A1B
RAP-DB (Rice) LOC_Os05g44070.1 : ras-related protein, putative, expressed
MaizeGDB (Corn) Zm00025a036613 , Zm00025a044235 , Zm00025a037063 , Zm00025a038289 , Zm00025a008844 , Zm00025a042339 , Zm00025a008978 , Zm00025a046500 , Zm00025a016417 , Zm00025a028122 , Zm00025a044575 , Zm00025a017900 , Zm00025a013755 , Zm00025a039651 , Zm00025a043281 , Zm00025a051086
Brachypodium KQK10571 , KQK12398 , KQK12397 , KQK09101 , KQK04867 , KQJ98137 , KQK08122 , KQK18040 , KQK12193 , PNT73882 , KQK06841 , KQJ98073 , KQK09739 , PNT64397 , KQK10572
Barley HORVU7Hr1G089120.1 , HORVU7Hr1G089120.2 , HORVU5Hr1G120210.2 , HORVU5Hr1G120210.1 , HORVU5Hr1G120210.4 , HORVU1Hr1G034400.4 , HORVU7Hr1G063910.2 , HORVU1Hr1G001920.3 , HORVU1Hr1G001920.2 , HORVU5Hr1G056470.1 , HORVU3Hr1G071740.6 , HORVU3Hr1G071740.4 , HORVU3Hr1G071740.5 , HORVU3Hr1G071740.2 , HORVU3Hr1G071740.3 , HORVU3Hr1G071740.1 , HORVU3Hr1G061000.1 , HORVU3Hr1G061000.2 , HORVU3Hr1G061000.3 , HORVU3Hr1G061000.4 , HORVU3Hr1G061000.5 , HORVU3Hr1G061000.6 , HORVU3Hr1G061000.7 , HORVU3Hr1G061000.8 , HORVU5Hr1G114250.1 , HORVU5Hr1G114250.2 , HORVU3Hr1G085710.4 , HORVU3Hr1G085710.2 , HORVU3Hr1G085710.3 , HORVU3Hr1G085710.1
Wheat TraesCS7B02G273300 , TraesCS5D02G498600 , TraesCS1A02G015400 , TraesCS3B02G272300 , TraesCS3B02G396200 , TraesCS5A02G184100 , TraesCS3A02G289600 , TraesCS1D02G405900 , TraesCS5B02G171900 , TraesCS5D02G188900 , TraesCS7D02G368300 , TraesCS3D02G357500 , TraesCS3B02G324300 , TraesCS5B02G182200 , TraesCS4A02G343500 , TraesCS7B02G200600 , TraesCS5D02G529500 , TraesCS7A02G285200 , TraesCS1D02G013300 , TraesCS1A02G398400 , TraesCS5D02G179100 , TraesCS1B02G426300 , TraesCS1B02G018900 , TraesCS3D02G289400 , TraesCS7A02G354400 , TraesCS7D02G289000 , TraesCS5A02G176000 , TraesCS3A02G364100 , TraesCS3A02G247000 , TraesCS5B02G530800 , TraesCS5B02G498600 , TraesCS5A02G485100 , TraesCS3D02G244500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G056100 - -
2 Sobic.007G028400 - -
3 Sobic.009G189300 ubiquitin E3 ligase ICP0, putative, expressed -
4 Sobic.005G196700 transporter family protein, putative, expressed -
5 Sobic.006G177600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G412200 expressed protein -
7 Sobic.010G083300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@gibberellin receptor GID1L2, putative, expressed -
8 Sobic.002G196900 expressed protein -
9 Sobic.010G189900 IQ calmodulin-binding motif family protein, putative, expressed -
10 Sobic.001G054800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@AT hook-containing DNA-binding protein, putative, expressed K11275: histone H1/5
11 Sobic.008G165800 Protein kinase domain containing protein, expressed -
12 Sobic.003G297400 enoyl-CoA hydratase/isomerase family protein, putative, expressed K05605: 3-hydroxyisobutyryl-CoA hydrolase
13 Sobic.007G213400 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@- -
14 Sobic.007G209100 expressed protein -
15 Sobic.006G223900 expressed protein -
16 Sobic.006G149400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
17 Sobic.010G003000 - -
18 Sobic.003G039100 expressed protein -
19 Sobic.009G051600 OsPDIL2-1 protein disulfide isomerase PDIL2-1, expressed K09584: PDIA6, protein disulfide-isomerase A6
20 Sobic.003G336600 homeobox domain containing protein, expressed -


Gene co-expression network
sample Sobic009G198700 Sobic009G198700 Sobic008G056100 Sobic008G056100 Sobic009G198700--Sobic008G056100 Sobic007G028400 Sobic007G028400 Sobic009G198700--Sobic007G028400 Sobic009G189300 Sobic009G189300 Sobic009G198700--Sobic009G189300 Sobic005G196700 Sobic005G196700 Sobic009G198700--Sobic005G196700 Sobic006G177600 Sobic006G177600 Sobic009G198700--Sobic006G177600 Sobic002G412200 Sobic002G412200 Sobic009G198700--Sobic002G412200 Sobic010G083300 Sobic010G083300 Sobic009G198700--Sobic010G083300 Sobic002G196900 Sobic002G196900 Sobic009G198700--Sobic002G196900 Sobic010G189900 Sobic010G189900 Sobic009G198700--Sobic010G189900 Sobic008G056100--Sobic007G028400 Sobic008G056100--Sobic009G198700 Sobic001G054800 Sobic001G054800 Sobic008G056100--Sobic001G054800 Sobic003G057366 Sobic003G057366 Sobic008G056100--Sobic003G057366 Sobic002G336100 Sobic002G336100 Sobic008G056100--Sobic002G336100 Sobic007G165000 Sobic007G165000 Sobic008G056100--Sobic007G165000 Sobic002G291066 Sobic002G291066 Sobic008G056100--Sobic002G291066 Sobic010G047100 Sobic010G047100 Sobic008G056100--Sobic010G047100 Sobic007G144600 Sobic007G144600 Sobic008G056100--Sobic007G144600 Sobic003G322532 Sobic003G322532 Sobic007G028400--Sobic003G322532 Sobic007G028400--Sobic008G056100 Sobic007G028400--Sobic003G057366 Sobic004G259700 Sobic004G259700 Sobic007G028400--Sobic004G259700 Sobic004G262900 Sobic004G262900 Sobic007G028400--Sobic004G262900 Sobic010G057100 Sobic010G057100 Sobic007G028400--Sobic010G057100 Sobic007G192700 Sobic007G192700 Sobic007G028400--Sobic007G192700 Sobic009G015000 Sobic009G015000 Sobic007G028400--Sobic009G015000 Sobic007G028400--Sobic001G054800 Sobic004G170500 Sobic004G170500 Sobic009G189300--Sobic004G170500 Sobic010G163732 Sobic010G163732 Sobic009G189300--Sobic010G163732 Sobic003G034600 Sobic003G034600 Sobic009G189300--Sobic003G034600 Sobic006G031400 Sobic006G031400 Sobic009G189300--Sobic006G031400 Sobic002G162300 Sobic002G162300 Sobic009G189300--Sobic002G162300 Sobic006G191800 Sobic006G191800 Sobic009G189300--Sobic006G191800 Sobic001G205000 Sobic001G205000 Sobic009G189300--Sobic001G205000 Sobic009G120700 Sobic009G120700 Sobic009G189300--Sobic009G120700 Sobic003G279100 Sobic003G279100 Sobic009G189300--Sobic003G279100 Sobic002G185400 Sobic002G185400 Sobic005G196700--Sobic002G185400 Sobic005G196700--Sobic010G083300 Sobic001G420600 Sobic001G420600 Sobic005G196700--Sobic001G420600 Sobic001G075300 Sobic001G075300 Sobic005G196700--Sobic001G075300 Sobic001G084200 Sobic001G084200 Sobic005G196700--Sobic001G084200 Sobic001G449200 Sobic001G449200 Sobic005G196700--Sobic001G449200 Sobic009G168700 Sobic009G168700 Sobic005G196700--Sobic009G168700 Sobic007G053000 Sobic007G053000 Sobic005G196700--Sobic007G053000 Sobic004G352800 Sobic004G352800 Sobic005G196700--Sobic004G352800 Sobic010G083050 Sobic010G083050 Sobic006G177600--Sobic010G083050 Sobic006G177600--Sobic005G196700 Sobic006G177600--Sobic010G083300 Sobic007G219000 Sobic007G219000 Sobic006G177600--Sobic007G219000 Sobic006G177600--Sobic004G352800 Sobic010G210400 Sobic010G210400 Sobic006G177600--Sobic010G210400 Sobic008G165800 Sobic008G165800 Sobic006G177600--Sobic008G165800 Sobic006G177600--Sobic009G198700 Sobic004G091500 Sobic004G091500 Sobic006G177600--Sobic004G091500 Sobic009G054301 Sobic009G054301 Sobic002G412200--Sobic009G054301 Sobic002G412200--Sobic009G198700 Sobic009G105300 Sobic009G105300 Sobic002G412200--Sobic009G105300 Sobic005G004800 Sobic005G004800 Sobic002G412200--Sobic005G004800 Sobic001G345900 Sobic001G345900 Sobic002G412200--Sobic001G345900 Sobic001G012400 Sobic001G012400 Sobic002G412200--Sobic001G012400 Sobic004G176100 Sobic004G176100 Sobic002G412200--Sobic004G176100 Sobic002G072200 Sobic002G072200 Sobic002G412200--Sobic002G072200 Sobic007G008400 Sobic007G008400 Sobic002G412200--Sobic007G008400 Sobic010G083300--Sobic001G075300 Sobic010G083300--Sobic002G185400 Sobic010G083300--Sobic005G196700 Sobic007G115600 Sobic007G115600 Sobic010G083300--Sobic007G115600 Sobic006G223850 Sobic006G223850 Sobic010G083300--Sobic006G223850 Sobic004G163400 Sobic004G163400 Sobic010G083300--Sobic004G163400 Sobic007G077600 Sobic007G077600 Sobic010G083300--Sobic007G077600 Sobic010G083300--Sobic010G083050 Sobic003G331900 Sobic003G331900 Sobic010G083300--Sobic003G331900 Sobic002G196900--Sobic008G165800 Sobic005G031100 Sobic005G031100 Sobic002G196900--Sobic005G031100 Sobic002G387400 Sobic002G387400 Sobic002G196900--Sobic002G387400 Sobic004G044500 Sobic004G044500 Sobic002G196900--Sobic004G044500 Sobic007G213500 Sobic007G213500 Sobic002G196900--Sobic007G213500 Sobic002G197400 Sobic002G197400 Sobic002G196900--Sobic002G197400 Sobic001G104100 Sobic001G104100 Sobic002G196900--Sobic001G104100 Sobic009G199900 Sobic009G199900 Sobic002G196900--Sobic009G199900 Sobic006G121200 Sobic006G121200 Sobic002G196900--Sobic006G121200 Sobic008G005200 Sobic008G005200 Sobic010G189900--Sobic008G005200 Sobic008G016600 Sobic008G016600 Sobic010G189900--Sobic008G016600 Sobic004G000500 Sobic004G000500 Sobic010G189900--Sobic004G000500 Sobic002G227100 Sobic002G227100 Sobic010G189900--Sobic002G227100 Sobic004G039100 Sobic004G039100 Sobic010G189900--Sobic004G039100 Sobic007G210200 Sobic007G210200 Sobic010G189900--Sobic007G210200 Sobic008G153300 Sobic008G153300 Sobic010G189900--Sobic008G153300 Sobic004G273550 Sobic004G273550 Sobic010G189900--Sobic004G273550 Sobic004G191800 Sobic004G191800 Sobic010G189900--Sobic004G191800
Octagon: transcription factors


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