Gene annotation
Transcriptome id Sobic.009G256800.1
Synonym Sb09g030663
Functional annotation expressed protein
UniProt A0A1B6PB99
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g62950.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G149200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@late embryogenesis abundant protein, putative, expressed -
2 Sobic.005G215200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@plant viral response family protein, putative, expressed -
3 Sobic.005G216000 BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
4 Sobic.003G135300 expressed protein -
5 Sobic.001G273500 leucine-rich repeat receptor-like protein kinase 1, putative, expressed -
6 Sobic.005G139225 - -
7 Sobic.005G231900 mitochondrial carrier protein, putative, expressed K15103: UCP2_3, solute carrier family 25 (mitochondrial uncoupling protein), member 8/9
8 Sobic.001G386400 phospholipid-transporting ATPase, putative, expressed K14802: DRS2, phospholipid-transporting ATPase
9 Sobic.002G085300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
10 Sobic.005G215900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@BBTI13 - Bowman-Birk type bran trypsin inhibitor precursor, expressed -
11 Sobic.K030700 - -
12 Sobic.010G227300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
13 Sobic.001G322700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@5-oxoprolinase, putative, expressed K01469: OPLAH, OXP1, 5-oxoprolinase (ATP-hydrolysing)
14 Sobic.009G114000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Os5bglu22 - beta-glucosidase homologue, similar to G. max isohydroxyurate hydrolase, expressed K01188: beta-glucosidase
15 Sobic.004G106900 "C3 PTPC, root-inducible gene"(PubMedID : 2308851)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphoenolphyruvate carboxylase(PubMedID : 26904072)@phosphoenolpyruvate carboxylase, putative, expressed K01595: phosphoenolpyruvate carboxylase
16 Sobic.004G162400 ERD1 protein, chloroplast precursor, putative, expressed K03696: ATP-dependent Clp protease ATP-binding subunit ClpC
17 Sobic.009G167700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@NLI interacting factor-like phosphatase, putative, expressed K15731: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase
18 Sobic.006G149600 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@auxin response factor, putative, expressed -
19 Sobic.002G420700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
20 Sobic.009G236200 lectin-like receptor kinase 7, putative, expressed -


Gene co-expression network
sample Sobic009G256800 Sobic009G256800 Sobic003G149200 Sobic003G149200 Sobic009G256800--Sobic003G149200 Sobic005G215200 Sobic005G215200 Sobic009G256800--Sobic005G215200 Sobic005G216000 Sobic005G216000 Sobic009G256800--Sobic005G216000 Sobic003G135300 Sobic003G135300 Sobic009G256800--Sobic003G135300 Sobic001G273500 Sobic001G273500 Sobic009G256800--Sobic001G273500 Sobic005G139225 Sobic005G139225 Sobic009G256800--Sobic005G139225 Sobic005G231900 Sobic005G231900 Sobic009G256800--Sobic005G231900 Sobic001G386400 Sobic001G386400 Sobic009G256800--Sobic001G386400 Sobic002G085300 Sobic002G085300 Sobic009G256800--Sobic002G085300 Sobic001G322700 Sobic001G322700 Sobic003G149200--Sobic001G322700 Sobic006G091700 Sobic006G091700 Sobic003G149200--Sobic006G091700 Sobic005G215900 Sobic005G215900 Sobic003G149200--Sobic005G215900 Sobic006G030700 Sobic006G030700 Sobic003G149200--Sobic006G030700 Sobic009G161000 Sobic009G161000 Sobic003G149200--Sobic009G161000 Sobic003G149200--Sobic005G216000 Sobic001G249300 Sobic001G249300 Sobic003G149200--Sobic001G249300 Sobic003G087200 Sobic003G087200 Sobic003G149200--Sobic003G087200 Sobic004G101900 Sobic004G101900 Sobic003G149200--Sobic004G101900 Sobic005G215200--Sobic003G149200 Sobic005G152100 Sobic005G152100 Sobic005G215200--Sobic005G152100 Sobic005G215200--Sobic005G215900 Sobic001G412700 Sobic001G412700 Sobic005G215200--Sobic001G412700 Sobic003G085300 Sobic003G085300 Sobic005G215200--Sobic003G085300 Sobic001G212000 Sobic001G212000 Sobic005G215200--Sobic001G212000 Sobic002G322900 Sobic002G322900 Sobic005G215200--Sobic002G322900 Sobic002G155400 Sobic002G155400 Sobic005G215200--Sobic002G155400 Sobic001G162700 Sobic001G162700 Sobic005G215200--Sobic001G162700 Sobic004G162400 Sobic004G162400 Sobic005G216000--Sobic004G162400 Sobic007G035000 Sobic007G035000 Sobic005G216000--Sobic007G035000 Sobic002G420700 Sobic002G420700 Sobic005G216000--Sobic002G420700 Sobic005G216000--Sobic005G215900 Sobic002G304000 Sobic002G304000 Sobic005G216000--Sobic002G304000 Sobic005G216000--Sobic005G231900 Sobic003G244600 Sobic003G244600 Sobic005G216000--Sobic003G244600 Sobic003G105800 Sobic003G105800 Sobic005G216000--Sobic003G105800 Sobic005G178100 Sobic005G178100 Sobic005G216000--Sobic005G178100 Sobic003G135300--Sobic009G256800 Sobic002G024100 Sobic002G024100 Sobic003G135300--Sobic002G024100 Sobic009G167700 Sobic009G167700 Sobic003G135300--Sobic009G167700 Sobic003G135300--Sobic001G273500 Sobic003G341800 Sobic003G341800 Sobic003G135300--Sobic003G341800 Sobic003G204501 Sobic003G204501 Sobic003G135300--Sobic003G204501 Sobic004G008800 Sobic004G008800 Sobic003G135300--Sobic004G008800 Sobic006G002600 Sobic006G002600 Sobic003G135300--Sobic006G002600 Sobic001G132000 Sobic001G132000 Sobic003G135300--Sobic001G132000 Sobic003G316300 Sobic003G316300 Sobic001G273500--Sobic003G316300 Sobic009G000200 Sobic009G000200 Sobic001G273500--Sobic009G000200 Sobic009G079300 Sobic009G079300 Sobic001G273500--Sobic009G079300 Sobic006G149600 Sobic006G149600 Sobic001G273500--Sobic006G149600 Sobic003G332000 Sobic003G332000 Sobic001G273500--Sobic003G332000 Sobic001G298500 Sobic001G298500 Sobic001G273500--Sobic001G298500 Sobic007G025800 Sobic007G025800 Sobic001G273500--Sobic007G025800 Sobic001G273500--Sobic004G162400 Sobic009G200300 Sobic009G200300 Sobic001G273500--Sobic009G200300 Sobic007G093000 Sobic007G093000 Sobic005G139225--Sobic007G093000 Sobic005G139225--Sobic001G162700 Sobic007G092900 Sobic007G092900 Sobic005G139225--Sobic007G092900 Sobic002G409500 Sobic002G409500 Sobic005G139225--Sobic002G409500 SobicK030700 SobicK030700 Sobic005G139225--SobicK030700 Sobic006G214200 Sobic006G214200 Sobic005G139225--Sobic006G214200 Sobic007G094050 Sobic007G094050 Sobic005G139225--Sobic007G094050 Sobic005G139225--Sobic006G030700 Sobic001G280200 Sobic001G280200 Sobic005G139225--Sobic001G280200 Sobic005G231900--Sobic004G162400 Sobic001G488500 Sobic001G488500 Sobic005G231900--Sobic001G488500 Sobic005G079900 Sobic005G079900 Sobic005G231900--Sobic005G079900 Sobic005G231900--Sobic004G101900 Sobic005G231900--Sobic005G216000 Sobic004G236600 Sobic004G236600 Sobic005G231900--Sobic004G236600 Sobic005G231900--Sobic002G304000 Sobic005G231900--Sobic002G322900 Sobic006G271200 Sobic006G271200 Sobic005G231900--Sobic006G271200 Sobic006G119200 Sobic006G119200 Sobic001G386400--Sobic006G119200 Sobic001G386400--Sobic009G167700 Sobic001G386400--Sobic009G000200 Sobic001G386400--Sobic003G316300 Sobic001G386400--Sobic002G155400 Sobic010G161450 Sobic010G161450 Sobic001G386400--Sobic010G161450 Sobic004G106900 Sobic004G106900 Sobic001G386400--Sobic004G106900 Sobic001G386400--Sobic002G024100 Sobic004G341200 Sobic004G341200 Sobic001G386400--Sobic004G341200 Sobic002G085300--Sobic006G091700 Sobic009G114000 Sobic009G114000 Sobic002G085300--Sobic009G114000 Sobic002G085300--Sobic002G420700 Sobic002G085300--Sobic003G087200 Sobic001G015500 Sobic001G015500 Sobic002G085300--Sobic001G015500 Sobic001G150600 Sobic001G150600 Sobic002G085300--Sobic001G150600 Sobic008G153400 Sobic008G153400 Sobic002G085300--Sobic008G153400 Sobic001G069900 Sobic001G069900 Sobic002G085300--Sobic001G069900 Sobic001G150650 Sobic001G150650 Sobic002G085300--Sobic001G150650
Octagon: transcription factors


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