Gene annotation
| Transcriptome id | Sobic.010G006000.2 |
|---|---|
| Synonym | NGA2, Sb10g000780 |
| Functional annotation | expressed protein |
| UniProt | A0A194YHN4 |
| Pfam | PF02362 |
| Panther DB | PTHR31140 PTHR31140:SF16 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0003677; DNA binding |
Orthologs (automatic annotation)
| TAIR | AT3G61970 : AP2/B3-like transcriptional factor family protein |
|---|---|
| RAP-DB (Rice) | LOC_Os06g01860.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a041171 |
| Brachypodium | KQK23932 , KQJ97599 |
| Barley | HORVU0Hr1G022200.1 , HORVU0Hr1G022200.2 , HORVU1Hr1G082670.10 , HORVU4Hr1G074300.2 , HORVU4Hr1G074300.1 , HORVU4Hr1G074300.6 , HORVU4Hr1G074300.4 , HORVU1Hr1G082670.8 , HORVU1Hr1G082670.9 , HORVU1Hr1G082670.6 , HORVU1Hr1G082670.7 , HORVU1Hr1G082670.4 , HORVU1Hr1G082670.5 |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G176350 | - | - |
| 2 | Sobic.001G049700 | UDP-rhamnose rhamnosyltransferase, putative, expressed | - |
| 3 | Sobic.010G035700 | expressed protein | - |
| 4 | Sobic.006G275300 | VQ domain containing protein, putative, expressed | - |
| 5 | Sobic.003G426100 | glutathione S-transferase, putative, expressed | K00799: GST, glutathione S-transferase |
| 6 | Sobic.004G180301 | - | - |
| 7 | Sobic.005G033900 | UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 8 | Sobic.007G066932 | - | - |
| 9 | Sobic.002G310500 | chalcone synthase, putative, expressed | - |
| 10 | Sobic.003G202000 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR16 - Auxin-responsive SAUR gene family member, expressed | - |
| 11 | Sobic.010G124300 | estradiol 17-beta-dehydrogenase 12, putative, expressed | K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase |
| 12 | Sobic.010G006100 | expressed protein | - |
| 13 | Sobic.007G067350 | - | - |
| 14 | Sobic.003G430600 | OsCML19 - Calmodulin-related calcium sensor protein, expressed | K13448: calcium-binding protein CML |
| 15 | Sobic.001G276550 | - | - |
| 16 | Sobic.005G156600 | UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed | K08237: hydroquinone glucosyltransferase |
| 17 | Sobic.002G195400 | "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed | K00083: cinnamyl-alcohol dehydrogenase |
| 18 | Sobic.003G437200 | sulfotransferase domain containing protein, expressed | - |
| 19 | Sobic.004G304300 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed | K15095: (+)-neomenthol dehydrogenase |
| 20 | Sobic.007G020900 | "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR31 - Auxin-responsive SAUR gene family member, expressed | K14488: SAUR family protein |
Gene co-expression network
Octagon: transcription factors
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