Gene annotation
Transcriptome id Sobic.010G007200.2,Sobic.010G007200.1
Synonym Sb10g000880
Functional annotation phosphoglycolate phosphatase, plasmid, putative, expressed
UniProt C5Z2P3 , A0A1W0VQZ2
Pfam PF13419
Panther DB PTHR18901 PTHR18901:SF35
NCBI CDD KOG2914; Predicted haloacid-halidohydrolase and related hydrolases
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G38740 : Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
RAP-DB (Rice) LOC_Os06g01990.1 : phosphoglycolate phosphatase, plasmid, putative, expressed
MaizeGDB (Corn) Zm00025a050289
Brachypodium -
Barley HORVU2Hr1G075610.5 , HORVU2Hr1G075610.4 , HORVU7Hr1G002970.4 , HORVU7Hr1G002970.3 , HORVU7Hr1G002970.2 , HORVU2Hr1G075610.3 , HORVU7Hr1G002970.1
Wheat TraesCS4A02G462400 , TraesCS7A02G027100 , TraesCS7A02G027100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G235500 bZIP transcription factor domain containing protein, expressed -
2 Sobic.001G208800 40S ribosomal protein S27a, putative, expressed K02977: RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
3 Sobic.005G045900 - -
4 Sobic.010G084700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
5 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
6 Sobic.007G067600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -
7 Sobic.001G231600 oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed K00059: fabG, 3-oxoacyl-[acyl-carrier protein] reductase
8 Sobic.004G221500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein K13113: UBL5, ubiquitin-like protein 5
9 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
10 Sobic.010G102300 expressed protein -
11 Sobic.006G084600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
12 Sobic.003G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@WRKY27, expressed -
13 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
14 Sobic.010G084300 highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
15 Sobic.007G067350 - -
16 Sobic.007G066932 - -
17 Sobic.009G128700 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
18 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
19 Sobic.001G495164 - -
20 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic010G007200 Sobic010G007200 Sobic002G235500 Sobic002G235500 Sobic010G007200--Sobic002G235500 Sobic001G208800 Sobic001G208800 Sobic010G007200--Sobic001G208800 Sobic005G045900 Sobic005G045900 Sobic010G007200--Sobic005G045900 Sobic010G084700 Sobic010G084700 Sobic010G007200--Sobic010G084700 Sobic002G195400 Sobic002G195400 Sobic010G007200--Sobic002G195400 Sobic007G067600 Sobic007G067600 Sobic010G007200--Sobic007G067600 Sobic001G231600 Sobic001G231600 Sobic010G007200--Sobic001G231600 Sobic004G221500 Sobic004G221500 Sobic010G007200--Sobic004G221500 Sobic001G317200 Sobic001G317200 Sobic010G007200--Sobic001G317200 Sobic010G239300 Sobic010G239300 Sobic002G235500--Sobic010G239300 Sobic002G235500--Sobic001G317200 Sobic002G415100 Sobic002G415100 Sobic002G235500--Sobic002G415100 Sobic006G099900 Sobic006G099900 Sobic002G235500--Sobic006G099900 Sobic009G164600 Sobic009G164600 Sobic002G235500--Sobic009G164600 Sobic001G021900 Sobic001G021900 Sobic002G235500--Sobic001G021900 Sobic001G325000 Sobic001G325000 Sobic002G235500--Sobic001G325000 Sobic003G252800 Sobic003G252800 Sobic002G235500--Sobic003G252800 Sobic007G141500 Sobic007G141500 Sobic002G235500--Sobic007G141500 Sobic002G041400 Sobic002G041400 Sobic001G208800--Sobic002G041400 Sobic002G041300 Sobic002G041300 Sobic001G208800--Sobic002G041300 Sobic001G208800--Sobic010G007200 Sobic010G035700 Sobic010G035700 Sobic001G208800--Sobic010G035700 Sobic006G275300 Sobic006G275300 Sobic001G208800--Sobic006G275300 Sobic010G102100 Sobic010G102100 Sobic001G208800--Sobic010G102100 Sobic007G067350 Sobic007G067350 Sobic001G208800--Sobic007G067350 Sobic003G176350 Sobic003G176350 Sobic001G208800--Sobic003G176350 Sobic003G307300 Sobic003G307300 Sobic001G208800--Sobic003G307300 Sobic010G084100 Sobic010G084100 Sobic005G045900--Sobic010G084100 Sobic003G286600 Sobic003G286600 Sobic005G045900--Sobic003G286600 Sobic005G045900--Sobic004G221500 Sobic003G317100 Sobic003G317100 Sobic005G045900--Sobic003G317100 Sobic005G045900--Sobic010G084700 Sobic007G155200 Sobic007G155200 Sobic005G045900--Sobic007G155200 Sobic010G044400 Sobic010G044400 Sobic005G045900--Sobic010G044400 Sobic006G084600 Sobic006G084600 Sobic005G045900--Sobic006G084600 Sobic004G071650 Sobic004G071650 Sobic005G045900--Sobic004G071650 Sobic010G084700--Sobic004G221500 Sobic010G084700--Sobic010G084100 Sobic010G117900 Sobic010G117900 Sobic010G084700--Sobic010G117900 Sobic002G184200 Sobic002G184200 Sobic010G084700--Sobic002G184200 Sobic010G176600 Sobic010G176600 Sobic010G084700--Sobic010G176600 Sobic010G084700--Sobic003G286600 Sobic001G348700 Sobic001G348700 Sobic010G084700--Sobic001G348700 Sobic001G423800 Sobic001G423800 Sobic010G084700--Sobic001G423800 Sobic001G192200 Sobic001G192200 Sobic010G084700--Sobic001G192200 Sobic002G195400--Sobic007G067600 Sobic001G319700 Sobic001G319700 Sobic002G195400--Sobic001G319700 Sobic003G426100 Sobic003G426100 Sobic002G195400--Sobic003G426100 Sobic007G066932 Sobic007G066932 Sobic002G195400--Sobic007G066932 Sobic010G102300 Sobic010G102300 Sobic002G195400--Sobic010G102300 Sobic003G426000 Sobic003G426000 Sobic002G195400--Sobic003G426000 Sobic002G195400--Sobic007G067350 Sobic001G317000 Sobic001G317000 Sobic002G195400--Sobic001G317000 Sobic004G304300 Sobic004G304300 Sobic002G195400--Sobic004G304300 Sobic007G067600--Sobic002G195400 Sobic007G067600--Sobic007G066932 Sobic007G067600--Sobic001G319700 Sobic007G067600--Sobic010G102300 Sobic005G101800 Sobic005G101800 Sobic007G067600--Sobic005G101800 Sobic007G067600--Sobic010G117900 Sobic003G430600 Sobic003G430600 Sobic007G067600--Sobic003G430600 Sobic007G067600--Sobic003G426000 Sobic001G495164 Sobic001G495164 Sobic007G067600--Sobic001G495164 Sobic007G135201 Sobic007G135201 Sobic001G231600--Sobic007G135201 Sobic001G231600--Sobic007G067600 Sobic001G231600--Sobic001G495164 Sobic001G231600--Sobic006G084600 Sobic001G231600--Sobic007G067350 Sobic001G231600--Sobic010G102300 Sobic001G231600--Sobic002G195400 Sobic004G128400 Sobic004G128400 Sobic001G231600--Sobic004G128400 Sobic001G231600--Sobic004G221500 Sobic004G221500--Sobic010G084700 Sobic004G221500--Sobic006G084600 Sobic004G221500--Sobic001G348700 Sobic004G221500--Sobic002G184200 Sobic004G221500--Sobic001G423800 Sobic004G221500--Sobic010G084100 Sobic004G221500--Sobic003G252800 Sobic004G221500--Sobic003G286600 Sobic004G221500--Sobic010G117900 Sobic005G051200 Sobic005G051200 Sobic001G317200--Sobic005G051200 Sobic001G317200--Sobic006G099900 Sobic001G317200--Sobic003G252800 Sobic010G084400 Sobic010G084400 Sobic001G317200--Sobic010G084400 Sobic001G317200--Sobic003G286600 Sobic008G050600 Sobic008G050600 Sobic001G317200--Sobic008G050600 Sobic003G240600 Sobic003G240600 Sobic001G317200--Sobic003G240600 Sobic001G317200--Sobic005G101800 Sobic002G416600 Sobic002G416600 Sobic001G317200--Sobic002G416600
Octagon: transcription factors


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