Gene annotation
Transcriptome id Sobic.001G208800.1
Synonym UBQ6, Sb01g018455
Functional annotation 40S ribosomal protein S27a, putative, expressed
UniProt A0A1B6QK27
Pfam PF00240 PF01599
Panther DB PTHR10666
NCBI CDD KOG0004; Ubiquitin/40S ribosomal protein S27a fusion
KEGG Orthology K02977; RP-S27Ae, RPS27A, ubiquitin-small subunit ribosomal protein S27Ae
Gene Ontology GO:0005515; protein binding GO:0006412translation GO:0005840ribosome GO:0003735structural constituent of ribosome


Orthologs (automatic annotation)
TAIR AT1G23410 : Ribosomal protein S27a / Ubiquitin family protein
RAP-DB (Rice) LOC_Os01g22490.1 : 40S ribosomal protein S27a, putative, expressed
MaizeGDB (Corn) Zm00025a006505
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G041400 ATP/GTP binding protein, putative, expressed -
2 Sobic.002G041300 expressed protein -
3 Sobic.010G007200 phosphoglycolate phosphatase, plasmid, putative, expressed -
4 Sobic.010G035700 expressed protein -
5 Sobic.006G275300 VQ domain containing protein, putative, expressed -
6 Sobic.010G102100 expressed protein -
7 Sobic.007G067350 - -
8 Sobic.003G176350 - -
9 Sobic.003G307300 - -
10 Sobic.010G084600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
11 Sobic.007G066932 - -
12 Sobic.006G084600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@amino acid permease family protein, putative, expressed -
13 Sobic.001G049700 UDP-rhamnose rhamnosyltransferase, putative, expressed -
14 Sobic.003G426100 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.010G102300 expressed protein -
16 Sobic.001G319700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.008G140300 nucleotide pyrophosphatase/phosphodiesterase, putative, expressed -
18 Sobic.002G195400 "Cinnamyl alcohol dehydrogenase, expressed in lignifying tissues"(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@a cinnamyl alcohol dehydrogenase (CAD)(PubmedID : 26440083)@Protein mannitol dehydrogenase (Os)(PubMedID : 27208977)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
19 Sobic.005G033900 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
20 Sobic.007G067400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Cupin domain containing protein, expressed -


Gene co-expression network
sample Sobic001G208800 Sobic001G208800 Sobic002G041400 Sobic002G041400 Sobic001G208800--Sobic002G041400 Sobic002G041300 Sobic002G041300 Sobic001G208800--Sobic002G041300 Sobic010G007200 Sobic010G007200 Sobic001G208800--Sobic010G007200 Sobic010G035700 Sobic010G035700 Sobic001G208800--Sobic010G035700 Sobic006G275300 Sobic006G275300 Sobic001G208800--Sobic006G275300 Sobic010G102100 Sobic010G102100 Sobic001G208800--Sobic010G102100 Sobic007G067350 Sobic007G067350 Sobic001G208800--Sobic007G067350 Sobic003G176350 Sobic003G176350 Sobic001G208800--Sobic003G176350 Sobic003G307300 Sobic003G307300 Sobic001G208800--Sobic003G307300 Sobic008G140300 Sobic008G140300 Sobic002G041400--Sobic008G140300 Sobic002G041400--Sobic002G041300 Sobic002G041400--Sobic001G208800 Sobic002G041400--Sobic007G067350 Sobic010G084600 Sobic010G084600 Sobic002G041400--Sobic010G084600 Sobic006G084600 Sobic006G084600 Sobic002G041400--Sobic006G084600 Sobic001G348700 Sobic001G348700 Sobic002G041400--Sobic001G348700 Sobic007G067400 Sobic007G067400 Sobic002G041400--Sobic007G067400 Sobic004G221500 Sobic004G221500 Sobic002G041400--Sobic004G221500 Sobic002G041300--Sobic002G041400 Sobic002G041300--Sobic010G084600 Sobic002G041300--Sobic008G140300 Sobic002G041300--Sobic001G208800 Sobic002G041300--Sobic007G067350 Sobic001G365100 Sobic001G365100 Sobic002G041300--Sobic001G365100 Sobic002G041300--Sobic006G084600 Sobic002G041300--Sobic007G067400 Sobic001G279701 Sobic001G279701 Sobic002G041300--Sobic001G279701 Sobic002G235500 Sobic002G235500 Sobic010G007200--Sobic002G235500 Sobic010G007200--Sobic001G208800 Sobic005G045900 Sobic005G045900 Sobic010G007200--Sobic005G045900 Sobic010G084700 Sobic010G084700 Sobic010G007200--Sobic010G084700 Sobic002G195400 Sobic002G195400 Sobic010G007200--Sobic002G195400 Sobic007G067600 Sobic007G067600 Sobic010G007200--Sobic007G067600 Sobic001G231600 Sobic001G231600 Sobic010G007200--Sobic001G231600 Sobic010G007200--Sobic004G221500 Sobic001G317200 Sobic001G317200 Sobic010G007200--Sobic001G317200 Sobic003G426100 Sobic003G426100 Sobic010G035700--Sobic003G426100 Sobic010G102300 Sobic010G102300 Sobic010G035700--Sobic010G102300 Sobic001G319700 Sobic001G319700 Sobic010G035700--Sobic001G319700 Sobic007G066932 Sobic007G066932 Sobic010G035700--Sobic007G066932 Sobic010G035700--Sobic007G067350 Sobic010G035700--Sobic002G195400 Sobic007G135201 Sobic007G135201 Sobic010G035700--Sobic007G135201 Sobic004G304300 Sobic004G304300 Sobic010G035700--Sobic004G304300 Sobic004G180301 Sobic004G180301 Sobic010G035700--Sobic004G180301 Sobic006G275300--Sobic010G102100 Sobic006G275300--Sobic003G176350 Sobic006G275300--Sobic010G035700 Sobic006G275300--Sobic003G307300 Sobic010G006000 Sobic010G006000 Sobic006G275300--Sobic010G006000 Sobic001G049700 Sobic001G049700 Sobic006G275300--Sobic001G049700 Sobic006G275300--Sobic003G426100 Sobic006G275300--Sobic001G319700 Sobic006G275300--Sobic010G102300 Sobic010G102100--Sobic002G195400 Sobic010G102100--Sobic001G319700 Sobic001G317000 Sobic001G317000 Sobic010G102100--Sobic001G317000 Sobic009G153100 Sobic009G153100 Sobic010G102100--Sobic009G153100 Sobic010G102100--Sobic003G426100 Sobic010G102100--Sobic007G066932 Sobic010G102100--Sobic010G102300 Sobic005G033900 Sobic005G033900 Sobic010G102100--Sobic005G033900 Sobic001G420600 Sobic001G420600 Sobic010G102100--Sobic001G420600 Sobic007G067350--Sobic007G066932 Sobic007G067350--Sobic002G195400 Sobic007G067350--Sobic003G426100 Sobic007G067350--Sobic006G084600 Sobic007G067350--Sobic010G102300 Sobic007G067350--Sobic008G140300 Sobic010G084300 Sobic010G084300 Sobic007G067350--Sobic010G084300 Sobic007G067350--Sobic001G319700 Sobic007G067350--Sobic010G035700 Sobic003G176350--Sobic005G033900 Sobic003G176350--Sobic010G006000 Sobic003G437200 Sobic003G437200 Sobic003G176350--Sobic003G437200 Sobic003G176350--Sobic007G066932 Sobic003G176350--Sobic003G426100 Sobic003G176350--Sobic007G067350 Sobic003G430600 Sobic003G430600 Sobic003G176350--Sobic003G430600 Sobic003G062600 Sobic003G062600 Sobic003G176350--Sobic003G062600 Sobic003G176350--Sobic006G084600 Sobic003G307300--Sobic010G084600 Sobic001G357100 Sobic001G357100 Sobic003G307300--Sobic001G357100 Sobic002G361100 Sobic002G361100 Sobic003G307300--Sobic002G361100 Sobic007G155200 Sobic007G155200 Sobic003G307300--Sobic007G155200 Sobic004G127200 Sobic004G127200 Sobic003G307300--Sobic004G127200 Sobic010G196600 Sobic010G196600 Sobic003G307300--Sobic010G196600 Sobic003G033900 Sobic003G033900 Sobic003G307300--Sobic003G033900 Sobic004G304625 Sobic004G304625 Sobic003G307300--Sobic004G304625 Sobic004G115500 Sobic004G115500 Sobic003G307300--Sobic004G115500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.