Gene annotation
Transcriptome id Sobic.010G066000.1
Synonym IRX4, Sb10g005700, CCR1, ATCCR1
Functional annotation Cinnamoyl-CoA reductase CCR1 (At) (PubMedID : 27208977)
Protein dihydroflavonol-4-reductase CCR1 (Os) (PubMedID : 27208977)
cinnamoyl-CoA reductase, putative, expressed
UniProt C5Z5I9 , C6JRT0
Pfam PF01370
Panther DB PTHR10366 PTHR10366:SF406
NCBI CDD KOG1502; Flavonol reductase/cinnamoyl-CoA reductase
KEGG Orthology K09753; cinnamoyl-CoA reductase
Gene Ontology GO:0003824; catalytic activity


Orthologs (automatic annotation)
TAIR AT1G15950 : cinnamoyl coa reductase 1
RAP-DB (Rice) LOC_Os08g34280.1 : cinnamoyl-CoA reductase, putative, expressed
MaizeGDB (Corn) Zm00025a049770 , Zm00025a005845 , Zm00025a045929
Brachypodium KQK19267 , KQK19266 , KQJ98430
Barley HORVU5Hr1G065330.6 , HORVU7Hr1G022220.5 , HORVU7Hr1G022220.4 , HORVU7Hr1G022220.6 , HORVU7Hr1G022220.1 , HORVU7Hr1G022220.3 , HORVU7Hr1G022220.2 , HORVU7Hr1G030500.2 , HORVU7Hr1G030500.1 , HORVU5Hr1G065330.12 , HORVU5Hr1G065330.13 , HORVU5Hr1G065330.10 , HORVU5Hr1G065330.11 , HORVU0Hr1G013070.6 , HORVU0Hr1G013070.5 , HORVU0Hr1G013070.4 , HORVU0Hr1G013070.3 , HORVU0Hr1G013070.2 , HORVU0Hr1G013070.1 , HORVU0Hr1G013070.9 , HORVU0Hr1G013070.8 , HORVU7Hr1G030380.9 , HORVU7Hr1G030380.8 , HORVU7Hr1G030380.5 , HORVU7Hr1G030380.4 , HORVU7Hr1G030380.7 , HORVU7Hr1G030380.6 , HORVU7Hr1G030380.3 , HORVU7Hr1G030380.2 , HORVU5Hr1G065330.8 , HORVU5Hr1G065330.9 , HORVU5Hr1G065330.1 , HORVU5Hr1G065330.2 , HORVU5Hr1G065330.3 , HORVU5Hr1G065330.4 , HORVU5Hr1G065330.5 , HORVU5Hr1G065330.7 , HORVU7Hr1G030380.11 , HORVU7Hr1G030380.10
Wheat TraesCS7B02G052600 , TraesCS6B02G175600 , TraesCS6B02G175600 , TraesCS7D02G150500 , TraesCS6A02G147300 , TraesCS7A02G149000 , TraesCS6D02G136600 , TraesCS6D02G136600 , TraesCS7D02G392400 , TraesCS7B02G298900 , TraesCS7D02G150600 , TraesCS5A02G225100 , TraesCS5A02G225100 , TraesCS5A02G225100 , TraesCS7B02G052700 , TraesCS7B02G052700 , TraesCS7B02G052700 , TraesCS7A02G398000 , TraesCS5D02G232400 , TraesCS6D02G136600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G000100 monoglyceride lipase, putative, expressed -
2 Sobic.004G333300 serine-rich protein, putative, expressed -
3 Sobic.006G242900 indole-3-acetate beta-glucosyltransferase, putative, expressed -
4 Sobic.009G128000 - -
5 Sobic.004G010300 glycerol-3-phosphate acyltransferase, putative, expressed K13508: glycerol-3-phosphate acyltransferase
6 Sobic.001G069400 expressed protein -
7 Sobic.003G003000 DNA-binding protein-related, putative, expressed K07466: RFA1, RPA1, replication factor A1
8 Sobic.004G309500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
9 Sobic.010G171501 - -
10 Sobic.007G034400 RNA recognition motif containing protein, putative, expressed -
11 Sobic.002G050200 expressed protein -
12 Sobic.001G321500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX391 - F-box domain containing protein, expressed -
13 Sobic.004G018400 peptidyl-prolyl cis-trans isomerase, putative, expressed K01802: peptidylprolyl isomerase
14 Sobic.004G114400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@- -
15 Sobic.009G062000 ribosomal protein L51, putative, expressed K03946: NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 2
16 Sobic.001G125900 lipoxygenase, putative, expressed K15718: linoleate 9S-lipoxygenase
17 Sobic.006G103900 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@wound/stress protein, putative, expressed -
18 Sobic.009G121900 Annexin arabidopsis 4(PubMedID : 26320239)@annexin, putative, expressed -
19 Sobic.008G181300 expressed protein -
20 Sobic.001G081400 ankyrin repeat domain containing protein, putative, expressed K18477: type IV protein arginine methyltransferase


Gene co-expression network
sample Sobic010G066000 Sobic010G066000 Sobic005G000100 Sobic005G000100 Sobic010G066000--Sobic005G000100 Sobic004G333300 Sobic004G333300 Sobic010G066000--Sobic004G333300 Sobic006G242900 Sobic006G242900 Sobic010G066000--Sobic006G242900 Sobic009G128000 Sobic009G128000 Sobic010G066000--Sobic009G128000 Sobic004G010300 Sobic004G010300 Sobic010G066000--Sobic004G010300 Sobic001G069400 Sobic001G069400 Sobic010G066000--Sobic001G069400 Sobic003G003000 Sobic003G003000 Sobic010G066000--Sobic003G003000 Sobic004G309500 Sobic004G309500 Sobic010G066000--Sobic004G309500 Sobic010G171501 Sobic010G171501 Sobic010G066000--Sobic010G171501 Sobic005G000100--Sobic004G010300 Sobic009G024600 Sobic009G024600 Sobic005G000100--Sobic009G024600 Sobic005G093400 Sobic005G093400 Sobic005G000100--Sobic005G093400 Sobic005G000100--Sobic004G309500 Sobic001G087900 Sobic001G087900 Sobic005G000100--Sobic001G087900 Sobic001G075000 Sobic001G075000 Sobic005G000100--Sobic001G075000 Sobic004G114400 Sobic004G114400 Sobic005G000100--Sobic004G114400 Sobic010G122800 Sobic010G122800 Sobic005G000100--Sobic010G122800 Sobic009G156300 Sobic009G156300 Sobic005G000100--Sobic009G156300 Sobic001G345400 Sobic001G345400 Sobic004G333300--Sobic001G345400 Sobic009G216050 Sobic009G216050 Sobic004G333300--Sobic009G216050 Sobic004G209500 Sobic004G209500 Sobic004G333300--Sobic004G209500 Sobic008G038100 Sobic008G038100 Sobic004G333300--Sobic008G038100 Sobic004G174000 Sobic004G174000 Sobic004G333300--Sobic004G174000 Sobic003G310500 Sobic003G310500 Sobic004G333300--Sobic003G310500 Sobic004G110400 Sobic004G110400 Sobic004G333300--Sobic004G110400 Sobic001G314800 Sobic001G314800 Sobic004G333300--Sobic001G314800 Sobic004G101000 Sobic004G101000 Sobic004G333300--Sobic004G101000 Sobic006G242900--Sobic004G010300 Sobic003G417000 Sobic003G417000 Sobic006G242900--Sobic003G417000 Sobic006G242900--Sobic005G000100 Sobic005G155600 Sobic005G155600 Sobic006G242900--Sobic005G155600 Sobic003G325500 Sobic003G325500 Sobic006G242900--Sobic003G325500 Sobic001G131400 Sobic001G131400 Sobic006G242900--Sobic001G131400 Sobic006G242900--Sobic010G066000 Sobic006G242900--Sobic004G114400 Sobic010G012800 Sobic010G012800 Sobic006G242900--Sobic010G012800 Sobic009G128000--Sobic004G333300 Sobic009G128000--Sobic003G003000 Sobic001G267000 Sobic001G267000 Sobic009G128000--Sobic001G267000 Sobic009G128000--Sobic010G171501 Sobic004G018400 Sobic004G018400 Sobic009G128000--Sobic004G018400 Sobic005G117200 Sobic005G117200 Sobic009G128000--Sobic005G117200 Sobic001G178800 Sobic001G178800 Sobic009G128000--Sobic001G178800 Sobic003G016400 Sobic003G016400 Sobic009G128000--Sobic003G016400 Sobic002G349400 Sobic002G349400 Sobic009G128000--Sobic002G349400 Sobic003G277500 Sobic003G277500 Sobic004G010300--Sobic003G277500 Sobic001G536500 Sobic001G536500 Sobic004G010300--Sobic001G536500 Sobic009G065300 Sobic009G065300 Sobic004G010300--Sobic009G065300 Sobic002G070200 Sobic002G070200 Sobic004G010300--Sobic002G070200 Sobic004G186500 Sobic004G186500 Sobic004G010300--Sobic004G186500 Sobic003G162700 Sobic003G162700 Sobic004G010300--Sobic003G162700 Sobic009G230100 Sobic009G230100 Sobic004G010300--Sobic009G230100 Sobic006G044932 Sobic006G044932 Sobic004G010300--Sobic006G044932 Sobic010G194300 Sobic010G194300 Sobic004G010300--Sobic010G194300 Sobic003G025200 Sobic003G025200 Sobic001G069400--Sobic003G025200 Sobic010G029400 Sobic010G029400 Sobic001G069400--Sobic010G029400 Sobic010G038700 Sobic010G038700 Sobic001G069400--Sobic010G038700 Sobic001G058900 Sobic001G058900 Sobic001G069400--Sobic001G058900 Sobic008G127500 Sobic008G127500 Sobic001G069400--Sobic008G127500 Sobic002G078400 Sobic002G078400 Sobic001G069400--Sobic002G078400 Sobic008G094600 Sobic008G094600 Sobic001G069400--Sobic008G094600 Sobic005G157200 Sobic005G157200 Sobic001G069400--Sobic005G157200 Sobic008G100000 Sobic008G100000 Sobic001G069400--Sobic008G100000 Sobic001G129400 Sobic001G129400 Sobic003G003000--Sobic001G129400 Sobic001G132900 Sobic001G132900 Sobic003G003000--Sobic001G132900 Sobic006G281200 Sobic006G281200 Sobic003G003000--Sobic006G281200 Sobic010G018000 Sobic010G018000 Sobic003G003000--Sobic010G018000 Sobic001G008800 Sobic001G008800 Sobic003G003000--Sobic001G008800 Sobic003G003000--Sobic004G018400 Sobic002G117200 Sobic002G117200 Sobic003G003000--Sobic002G117200 Sobic010G094800 Sobic010G094800 Sobic003G003000--Sobic010G094800 Sobic005G127100 Sobic005G127100 Sobic003G003000--Sobic005G127100 Sobic004G309500--Sobic005G000100 Sobic004G309500--Sobic002G117200 Sobic004G352900 Sobic004G352900 Sobic004G309500--Sobic004G352900 Sobic003G401400 Sobic003G401400 Sobic004G309500--Sobic003G401400 Sobic004G309500--Sobic009G156300 Sobic001G321500 Sobic001G321500 Sobic004G309500--Sobic001G321500 Sobic001G202400 Sobic001G202400 Sobic004G309500--Sobic001G202400 Sobic004G014000 Sobic004G014000 Sobic004G309500--Sobic004G014000 Sobic001G022600 Sobic001G022600 Sobic004G309500--Sobic001G022600 Sobic009G131100 Sobic009G131100 Sobic010G171501--Sobic009G131100 Sobic010G171501--Sobic001G536500 Sobic010G171501--Sobic005G127100 Sobic010G171501--Sobic003G003000 Sobic001G198200 Sobic001G198200 Sobic010G171501--Sobic001G198200 Sobic004G311300 Sobic004G311300 Sobic010G171501--Sobic004G311300 Sobic006G108600 Sobic006G108600 Sobic010G171501--Sobic006G108600 Sobic005G080200 Sobic005G080200 Sobic010G171501--Sobic005G080200 Sobic001G081400 Sobic001G081400 Sobic010G171501--Sobic001G081400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.