Gene annotation
Transcriptome id Sobic.010G203000.1
Synonym
Functional annotation -
UniProt A0A194YKH5
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) -
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
2 Sobic.002G403500 tetratricopeptide-like helical, putative, expressed -
3 Sobic.001G443900 peptide transporter PTR2, putative, expressed -
4 Sobic.008G017800 alpha-N-arabinofuranosidase A, putative, expressed K01209: alpha-L-arabinofuranosidase
5 Sobic.002G032700 "Photosystem II 10kDa polypeptide, chloroplastic (Precursor)"(PubMedID : 26186930)@"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@PSBR -photosystem II subunit R (At)(PubMedID : 27208977)@photosystem II 10 kDa polypeptide, chloroplast precursor, putative, expressed K03541: photosystem II 10kDa protein
6 Sobic.003G005800 salt stress root protein RS1, putative, expressed -
7 Sobic.006G076800 serine/threonine-protein kinase receptor precursor, putative, expressed -
8 Sobic.004G060900 STRUBBELIG-RECEPTOR FAMILY 3 precursor, putative, expressed -
9 Sobic.004G037900 GHMP kinases ATP-binding protein, putative, expressed K12446: L-arabinokinase
10 Sobic.010G203100 - -
11 Sobic.002G188500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@trehalose-6-phosphate synthase, putative, expressed K16055: trehalose 6-phosphate synthase/phosphatase
12 Sobic.006G083400 OsPDIL5-2 protein disulfide isomerase PDIL5-2, expressed K09580: PDIA1, protein disulfide-isomerase A1
13 Sobic.001G178700 NBS-LRR disease resistance protein, putative, expressed -
14 Sobic.002G315800 Papain family cysteine protease domain containing protein, expressed K01363: cathepsin B
15 Sobic.007G202800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@mitochondrial carrier protein, putative, expressed K14684: solute carrier family 25 (mitochondrial phosphate transporter), member 23/24/25/41
16 Sobic.004G043001 - -
17 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
18 Sobic.005G209100 SCARECROW, putative, expressed -
19 Sobic.006G138400 regulatory subunit, putative, expressed -
20 Sobic.005G225400 expressed protein -


Gene co-expression network
sample Sobic010G203000 Sobic010G203000 Sobic001G438600 Sobic001G438600 Sobic010G203000--Sobic001G438600 Sobic002G403500 Sobic002G403500 Sobic010G203000--Sobic002G403500 Sobic001G443900 Sobic001G443900 Sobic010G203000--Sobic001G443900 Sobic008G017800 Sobic008G017800 Sobic010G203000--Sobic008G017800 Sobic002G032700 Sobic002G032700 Sobic010G203000--Sobic002G032700 Sobic003G005800 Sobic003G005800 Sobic010G203000--Sobic003G005800 Sobic006G076800 Sobic006G076800 Sobic010G203000--Sobic006G076800 Sobic004G060900 Sobic004G060900 Sobic010G203000--Sobic004G060900 Sobic004G037900 Sobic004G037900 Sobic010G203000--Sobic004G037900 Sobic001G301700 Sobic001G301700 Sobic001G438600--Sobic001G301700 Sobic004G355000 Sobic004G355000 Sobic001G438600--Sobic004G355000 Sobic001G325200 Sobic001G325200 Sobic001G438600--Sobic001G325200 Sobic001G207400 Sobic001G207400 Sobic001G438600--Sobic001G207400 Sobic003G428400 Sobic003G428400 Sobic001G438600--Sobic003G428400 Sobic007G068100 Sobic007G068100 Sobic001G438600--Sobic007G068100 Sobic001G015500 Sobic001G015500 Sobic001G438600--Sobic001G015500 Sobic001G474500 Sobic001G474500 Sobic001G438600--Sobic001G474500 Sobic007G186200 Sobic007G186200 Sobic001G438600--Sobic007G186200 Sobic001G248300 Sobic001G248300 Sobic002G403500--Sobic001G248300 Sobic002G403500--Sobic004G060900 Sobic003G100800 Sobic003G100800 Sobic002G403500--Sobic003G100800 Sobic002G403500--Sobic001G474500 Sobic002G403500--Sobic001G438600 Sobic001G178700 Sobic001G178700 Sobic002G403500--Sobic001G178700 Sobic009G229800 Sobic009G229800 Sobic002G403500--Sobic009G229800 Sobic002G169900 Sobic002G169900 Sobic002G403500--Sobic002G169900 Sobic002G403500--Sobic004G355000 Sobic006G214500 Sobic006G214500 Sobic001G443900--Sobic006G214500 Sobic009G121100 Sobic009G121100 Sobic001G443900--Sobic009G121100 Sobic001G443900--Sobic003G005800 Sobic001G373200 Sobic001G373200 Sobic001G443900--Sobic001G373200 Sobic003G407300 Sobic003G407300 Sobic001G443900--Sobic003G407300 Sobic006G138400 Sobic006G138400 Sobic001G443900--Sobic006G138400 Sobic001G447500 Sobic001G447500 Sobic001G443900--Sobic001G447500 Sobic001G156100 Sobic001G156100 Sobic001G443900--Sobic001G156100 Sobic001G443900--Sobic009G229800 Sobic008G017800--Sobic007G068100 Sobic008G017800--Sobic001G325200 Sobic003G329400 Sobic003G329400 Sobic008G017800--Sobic003G329400 Sobic003G148800 Sobic003G148800 Sobic008G017800--Sobic003G148800 Sobic008G017800--Sobic001G474500 Sobic009G211400 Sobic009G211400 Sobic008G017800--Sobic009G211400 Sobic003G366400 Sobic003G366400 Sobic008G017800--Sobic003G366400 Sobic007G219900 Sobic007G219900 Sobic008G017800--Sobic007G219900 Sobic009G057300 Sobic009G057300 Sobic008G017800--Sobic009G057300 Sobic006G003400 Sobic006G003400 Sobic002G032700--Sobic006G003400 Sobic002G281500 Sobic002G281500 Sobic002G032700--Sobic002G281500 Sobic009G211000 Sobic009G211000 Sobic002G032700--Sobic009G211000 Sobic002G032700--Sobic002G403500 Sobic001G176600 Sobic001G176600 Sobic002G032700--Sobic001G176600 Sobic002G032700--Sobic001G248300 Sobic005G209100 Sobic005G209100 Sobic002G032700--Sobic005G209100 Sobic002G032700--Sobic002G169900 Sobic002G032700--Sobic001G438600 Sobic002G188500 Sobic002G188500 Sobic003G005800--Sobic002G188500 Sobic003G005800--Sobic001G443900 Sobic009G235900 Sobic009G235900 Sobic003G005800--Sobic009G235900 Sobic008G160700 Sobic008G160700 Sobic003G005800--Sobic008G160700 Sobic003G005800--Sobic004G037900 Sobic003G005800--Sobic006G138400 Sobic001G194900 Sobic001G194900 Sobic003G005800--Sobic001G194900 Sobic003G005800--Sobic009G121100 Sobic003G005800--Sobic006G214500 Sobic001G145700 Sobic001G145700 Sobic006G076800--Sobic001G145700 Sobic002G046800 Sobic002G046800 Sobic006G076800--Sobic002G046800 Sobic005G133200 Sobic005G133200 Sobic006G076800--Sobic005G133200 Sobic006G076800--Sobic002G032700 Sobic007G120401 Sobic007G120401 Sobic006G076800--Sobic007G120401 Sobic002G140700 Sobic002G140700 Sobic006G076800--Sobic002G140700 Sobic003G010300 Sobic003G010300 Sobic006G076800--Sobic003G010300 Sobic006G076800--Sobic006G003400 Sobic008G079300 Sobic008G079300 Sobic006G076800--Sobic008G079300 Sobic004G060900--Sobic001G474500 Sobic004G321800 Sobic004G321800 Sobic004G060900--Sobic004G321800 Sobic004G060900--Sobic007G068100 Sobic004G060900--Sobic003G148800 Sobic004G060900--Sobic001G325200 Sobic002G324000 Sobic002G324000 Sobic004G060900--Sobic002G324000 Sobic004G060900--Sobic009G229800 Sobic004G060900--Sobic003G428400 Sobic004G060900--Sobic009G057300 Sobic001G151500 Sobic001G151500 Sobic004G037900--Sobic001G151500 Sobic004G037900--Sobic002G188500 Sobic004G037900--Sobic008G160700 Sobic001G490000 Sobic001G490000 Sobic004G037900--Sobic001G490000 Sobic010G001600 Sobic010G001600 Sobic004G037900--Sobic010G001600 Sobic004G037900--Sobic003G005800 Sobic009G119200 Sobic009G119200 Sobic004G037900--Sobic009G119200 Sobic003G145900 Sobic003G145900 Sobic004G037900--Sobic003G145900 Sobic004G037900--Sobic009G235900
Octagon: transcription factors


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