Gene annotation
Transcriptome id Sobic.004G043001.3,Sobic.004G043001.9,Sobic.004G043001.1,Sobic.004G043001.8,Sobic.004G043001.7,Sobic.004G043001.4,Sobic.004G043001.5,Sobic.004G043001.6,Sobic.004G043001.2
Synonym -
Functional annotation -
UniProt A0A1Z5RKX3 , A0A1Z5RLP1 , A0A1Z5RL24 , A0A1Z5RLD4 , A0A1Z5RLC1 , A0A1Z5RLY1 , A0A1Z5RKV3 , A0A1Z5RKV6
Pfam -
Panther DB PTHR33065 PTHR33065:SF20 PTHR33065:SF20 PTHR33065
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os09g07160.1,LOC_Os04g38260.1,LOC_Os04g38290.1 : expressed protein
MaizeGDB (Corn) Zm00025a019016 , Zm00025a025111
Brachypodium PNT73509
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G206401 - -
2 Sobic.006G138800 phosphoribosyl transferase, putative, expressed K00759: APRT, adenine phosphoribosyltransferase
3 Sobic.003G304200 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@phospholipase, patatin family, putative, expressed K14674: TAG lipase / steryl ester hydrolase / phospholipase A2 / LPA acyltransferase
4 Sobic.003G005600 ubiquitin conjugating enzyme protein, putative, expressed K10581: ubiquitin-conjugating enzyme E2 O
5 Sobic.001G274800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
6 Sobic.008G131400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
7 Sobic.004G242500 glycosyl hydrolase family 47 domain contain protein, expressed K10084: ER degradation enhancer, mannosidase alpha-like 1
8 Sobic.010G182500 ras-related protein, putative, expressed K07936: GTP-binding nuclear protein Ran
9 Sobic.007G186200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@solute carrier family 35 member F1, putative, expressed K15287: solute carrier family 35, member F1/2
10 Sobic.001G438600 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@dihydrodipicolinate reductase, putative, expressed K00215: 4-hydroxy-tetrahydrodipicolinate reductase
11 Sobic.003G105800 No apical meristem protein, putative, expressed -
12 Sobic.010G203000 - -
13 Sobic.002G431000 transporter, putative, expressed -
14 Sobic.009G241000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@3 Ketoacyl CoA synthetase 11 KCS11 (At)(PubMedID : 27208977)@3-ketoacyl-CoA synthase, putative, expressed K15397: 3-ketoacyl-CoA synthase
15 Sobic.007G068100 aconitate hydratase protein, putative, expressed K01681: ACO, aconitate hydratase
16 Sobic.002G304000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@nitrilase, putative, expressed K01431: UPB1, beta-ureidopropionase
17 Sobic.003G184900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@esterase, putative, expressed -
18 Sobic.004G345800 Peroxisomal 3-ketoacyl-CoA thiolase 3 PKT3 (At)(PubMedID : 27208977)@3-ketoacyl-CoA thiolase, peroxisomal precursor, putative, expressed K07513: acetyl-CoA acyltransferase 1
19 Sobic.008G079300 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
20 Sobic.003G388251 - K01166: ribonuclease T2


Gene co-expression network
sample Sobic004G043001 Sobic004G043001 Sobic004G206401 Sobic004G206401 Sobic004G043001--Sobic004G206401 Sobic006G138800 Sobic006G138800 Sobic004G043001--Sobic006G138800 Sobic003G304200 Sobic003G304200 Sobic004G043001--Sobic003G304200 Sobic003G005600 Sobic003G005600 Sobic004G043001--Sobic003G005600 Sobic001G274800 Sobic001G274800 Sobic004G043001--Sobic001G274800 Sobic008G131400 Sobic008G131400 Sobic004G043001--Sobic008G131400 Sobic004G242500 Sobic004G242500 Sobic004G043001--Sobic004G242500 Sobic010G182500 Sobic010G182500 Sobic004G043001--Sobic010G182500 Sobic007G186200 Sobic007G186200 Sobic004G043001--Sobic007G186200 Sobic009G241000 Sobic009G241000 Sobic004G206401--Sobic009G241000 Sobic004G206401--Sobic001G274800 Sobic004G206401--Sobic004G043001 Sobic003G184900 Sobic003G184900 Sobic004G206401--Sobic003G184900 Sobic003G105800 Sobic003G105800 Sobic004G206401--Sobic003G105800 Sobic008G079300 Sobic008G079300 Sobic004G206401--Sobic008G079300 Sobic002G265300 Sobic002G265300 Sobic004G206401--Sobic002G265300 Sobic004G206401--Sobic010G182500 Sobic004G206401--Sobic007G186200 Sobic006G138800--Sobic008G131400 Sobic006G138800--Sobic004G043001 Sobic004G320600 Sobic004G320600 Sobic006G138800--Sobic004G320600 Sobic006G138800--Sobic007G186200 Sobic007G068100 Sobic007G068100 Sobic006G138800--Sobic007G068100 Sobic009G207600 Sobic009G207600 Sobic006G138800--Sobic009G207600 Sobic003G388251 Sobic003G388251 Sobic006G138800--Sobic003G388251 Sobic006G199000 Sobic006G199000 Sobic006G138800--Sobic006G199000 Sobic003G429800 Sobic003G429800 Sobic006G138800--Sobic003G429800 Sobic007G088100 Sobic007G088100 Sobic003G304200--Sobic007G088100 Sobic008G061100 Sobic008G061100 Sobic003G304200--Sobic008G061100 Sobic001G436900 Sobic001G436900 Sobic003G304200--Sobic001G436900 Sobic002G058500 Sobic002G058500 Sobic003G304200--Sobic002G058500 Sobic001G375600 Sobic001G375600 Sobic003G304200--Sobic001G375600 Sobic001G227800 Sobic001G227800 Sobic003G304200--Sobic001G227800 Sobic001G279100 Sobic001G279100 Sobic003G304200--Sobic001G279100 Sobic006G004500 Sobic006G004500 Sobic003G304200--Sobic006G004500 Sobic003G304200--Sobic003G005600 Sobic009G126900 Sobic009G126900 Sobic003G005600--Sobic009G126900 Sobic002G304000 Sobic002G304000 Sobic003G005600--Sobic002G304000 Sobic001G003000 Sobic001G003000 Sobic003G005600--Sobic001G003000 Sobic003G329400 Sobic003G329400 Sobic003G005600--Sobic003G329400 Sobic006G271200 Sobic006G271200 Sobic003G005600--Sobic006G271200 Sobic004G101900 Sobic004G101900 Sobic003G005600--Sobic004G101900 Sobic008G062200 Sobic008G062200 Sobic003G005600--Sobic008G062200 Sobic010G043400 Sobic010G043400 Sobic003G005600--Sobic010G043400 Sobic010G064700 Sobic010G064700 Sobic003G005600--Sobic010G064700 Sobic001G274800--Sobic003G184900 Sobic006G100332 Sobic006G100332 Sobic001G274800--Sobic006G100332 Sobic004G321800 Sobic004G321800 Sobic001G274800--Sobic004G321800 Sobic002G324000 Sobic002G324000 Sobic001G274800--Sobic002G324000 Sobic001G274800--Sobic004G206401 Sobic001G274800--Sobic003G105800 Sobic001G274800--Sobic007G068100 Sobic001G274800--Sobic007G186200 Sobic001G182500 Sobic001G182500 Sobic001G274800--Sobic001G182500 Sobic008G131400--Sobic004G320600 Sobic008G131400--Sobic003G105800 Sobic008G131400--Sobic004G321800 Sobic008G131400--Sobic003G184900 Sobic008G131400--Sobic006G100332 Sobic003G087200 Sobic003G087200 Sobic008G131400--Sobic003G087200 Sobic008G131400--Sobic008G079300 Sobic009G226300 Sobic009G226300 Sobic008G131400--Sobic009G226300 Sobic008G131400--Sobic007G186200 Sobic001G224600 Sobic001G224600 Sobic004G242500--Sobic001G224600 Sobic003G428400 Sobic003G428400 Sobic004G242500--Sobic003G428400 Sobic002G156000 Sobic002G156000 Sobic004G242500--Sobic002G156000 Sobic001G207400 Sobic001G207400 Sobic004G242500--Sobic001G207400 Sobic001G474700 Sobic001G474700 Sobic004G242500--Sobic001G474700 Sobic007G200500 Sobic007G200500 Sobic004G242500--Sobic007G200500 Sobic001G413900 Sobic001G413900 Sobic004G242500--Sobic001G413900 Sobic001G301700 Sobic001G301700 Sobic004G242500--Sobic001G301700 Sobic004G162400 Sobic004G162400 Sobic004G242500--Sobic004G162400 Sobic010G182500--Sobic009G226300 Sobic007G187300 Sobic007G187300 Sobic010G182500--Sobic007G187300 Sobic009G054500 Sobic009G054500 Sobic010G182500--Sobic009G054500 Sobic001G249300 Sobic001G249300 Sobic010G182500--Sobic001G249300 Sobic005G018500 Sobic005G018500 Sobic010G182500--Sobic005G018500 Sobic010G182500--Sobic006G100332 Sobic003G138200 Sobic003G138200 Sobic010G182500--Sobic003G138200 Sobic003G259200 Sobic003G259200 Sobic010G182500--Sobic003G259200 Sobic004G260000 Sobic004G260000 Sobic010G182500--Sobic004G260000 Sobic001G325200 Sobic001G325200 Sobic007G186200--Sobic001G325200 Sobic007G186200--Sobic002G304000 Sobic007G186200--Sobic009G226300 Sobic001G015500 Sobic001G015500 Sobic007G186200--Sobic001G015500 Sobic007G186200--Sobic007G068100 Sobic003G355600 Sobic003G355600 Sobic007G186200--Sobic003G355600 Sobic001G150600 Sobic001G150600 Sobic007G186200--Sobic001G150600 Sobic007G186200--Sobic004G101900 Sobic007G186200--Sobic009G054500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.