Gene annotation
Transcriptome id Sobic.001G006500.1
Synonym Sb01g000690
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
OsFBDUF19 - F-box and DUF domain containing protein, expressed
UniProt C5WRZ0
Pfam PF00646
Panther DB PTHR32133 PTHR32133:SF131
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G57790 : F-box family protein
RAP-DB (Rice) LOC_Os03g63850.1 : OsFBDUF19 - F-box and DUF domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G006500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G176900 proton pump interactor, putative, expressed -
2 Sobic.005G138900 zinc finger DHHC domain-containing protein, putative, expressed K16675: palmitoyltransferase ZDHHC9/14/18
3 Sobic.003G418900 expressed protein -
4 Sobic.003G084800 expressed protein -
5 Sobic.001G227601 - -
6 Sobic.009G236700 DUF1645 domain containing protein, putative, expressed -
7 Sobic.001G181200 - -
8 Sobic.002G208301 - K05387: glutamate receptor, ionotropic, plant
9 Sobic.003G315900 - -
10 Sobic.010G183900 expressed protein -
11 Sobic.004G087900 - -
12 Sobic.007G031000 X8 domain containing protein, expressed -
13 Sobic.001G004901 - -
14 Sobic.005G023100 OsFBX369 - F-box domain containing protein, expressed -
15 Sobic.004G093000 protein kinase domain containing protein, putative, expressed -
16 Sobic.002G303900 CPuORF22 - conserved peptide uORF-containing transcript, expressed -
17 Sobic.002G375600 expressed protein -
18 Sobic.001G169000 expressed protein -
19 Sobic.002G427201 - -
20 Sobic.009G106300 - -


Gene co-expression network
sample Sobic001G006500 Sobic001G006500 Sobic002G176900 Sobic002G176900 Sobic001G006500--Sobic002G176900 Sobic005G138900 Sobic005G138900 Sobic001G006500--Sobic005G138900 Sobic003G418900 Sobic003G418900 Sobic001G006500--Sobic003G418900 Sobic003G084800 Sobic003G084800 Sobic001G006500--Sobic003G084800 Sobic001G227601 Sobic001G227601 Sobic001G006500--Sobic001G227601 Sobic009G236700 Sobic009G236700 Sobic001G006500--Sobic009G236700 Sobic001G181200 Sobic001G181200 Sobic001G006500--Sobic001G181200 Sobic002G208301 Sobic002G208301 Sobic001G006500--Sobic002G208301 Sobic003G315900 Sobic003G315900 Sobic001G006500--Sobic003G315900 Sobic010G266100 Sobic010G266100 Sobic002G176900--Sobic010G266100 Sobic001G251500 Sobic001G251500 Sobic002G176900--Sobic001G251500 Sobic005G023100 Sobic005G023100 Sobic002G176900--Sobic005G023100 Sobic003G374400 Sobic003G374400 Sobic002G176900--Sobic003G374400 Sobic006G218100 Sobic006G218100 Sobic002G176900--Sobic006G218100 Sobic007G213200 Sobic007G213200 Sobic002G176900--Sobic007G213200 Sobic003G002900 Sobic003G002900 Sobic002G176900--Sobic003G002900 Sobic002G176900--Sobic005G138900 Sobic001G536200 Sobic001G536200 Sobic002G176900--Sobic001G536200 Sobic004G082000 Sobic004G082000 Sobic005G138900--Sobic004G082000 Sobic002G241900 Sobic002G241900 Sobic005G138900--Sobic002G241900 Sobic005G138900--Sobic007G213200 Sobic005G138900--Sobic009G236700 Sobic005G138900--Sobic006G218100 Sobic005G160900 Sobic005G160900 Sobic005G138900--Sobic005G160900 Sobic005G017400 Sobic005G017400 Sobic005G138900--Sobic005G017400 Sobic003G122900 Sobic003G122900 Sobic005G138900--Sobic003G122900 Sobic007G184300 Sobic007G184300 Sobic005G138900--Sobic007G184300 Sobic010G068001 Sobic010G068001 Sobic003G418900--Sobic010G068001 Sobic004G345200 Sobic004G345200 Sobic003G418900--Sobic004G345200 Sobic008G159800 Sobic008G159800 Sobic003G418900--Sobic008G159800 Sobic001G169000 Sobic001G169000 Sobic003G418900--Sobic001G169000 Sobic003G130650 Sobic003G130650 Sobic003G418900--Sobic003G130650 Sobic007G165100 Sobic007G165100 Sobic003G418900--Sobic007G165100 Sobic001G193700 Sobic001G193700 Sobic003G418900--Sobic001G193700 Sobic010G242000 Sobic010G242000 Sobic003G418900--Sobic010G242000 Sobic010G213100 Sobic010G213100 Sobic003G418900--Sobic010G213100 Sobic008G127600 Sobic008G127600 Sobic003G084800--Sobic008G127600 Sobic003G084800--Sobic009G236700 Sobic003G299400 Sobic003G299400 Sobic003G084800--Sobic003G299400 Sobic005G106800 Sobic005G106800 Sobic003G084800--Sobic005G106800 Sobic010G173550 Sobic010G173550 Sobic003G084800--Sobic010G173550 Sobic002G189350 Sobic002G189350 Sobic003G084800--Sobic002G189350 Sobic009G221701 Sobic009G221701 Sobic003G084800--Sobic009G221701 Sobic002G429200 Sobic002G429200 Sobic003G084800--Sobic002G429200 Sobic002G149550 Sobic002G149550 Sobic003G084800--Sobic002G149550 Sobic009G005750 Sobic009G005750 Sobic001G227601--Sobic009G005750 Sobic004G087900 Sobic004G087900 Sobic001G227601--Sobic004G087900 Sobic001G227601--Sobic003G315900 Sobic007G031000 Sobic007G031000 Sobic001G227601--Sobic007G031000 Sobic001G227601--Sobic002G208301 Sobic002G375600 Sobic002G375600 Sobic001G227601--Sobic002G375600 Sobic009G106300 Sobic009G106300 Sobic001G227601--Sobic009G106300 Sobic003G017300 Sobic003G017300 Sobic001G227601--Sobic003G017300 Sobic004G258450 Sobic004G258450 Sobic001G227601--Sobic004G258450 Sobic009G236700--Sobic004G082000 Sobic009G236700--Sobic007G213200 Sobic009G236700--Sobic005G138900 Sobic009G236700--Sobic003G084800 Sobic001G042400 Sobic001G042400 Sobic009G236700--Sobic001G042400 Sobic009G236700--Sobic010G266100 Sobic009G236700--Sobic002G241900 Sobic010G256433 Sobic010G256433 Sobic009G236700--Sobic010G256433 Sobic009G236700--Sobic005G160900 Sobic001G181200--Sobic004G082000 Sobic001G181200--Sobic009G236700 Sobic001G181200--Sobic010G266100 Sobic001G181200--Sobic005G138900 Sobic004G327900 Sobic004G327900 Sobic001G181200--Sobic004G327900 Sobic001G181200--Sobic007G213200 Sobic007G009900 Sobic007G009900 Sobic001G181200--Sobic007G009900 Sobic001G181200--Sobic002G241900 Sobic001G181200--Sobic002G176900 Sobic003G399800 Sobic003G399800 Sobic002G208301--Sobic003G399800 Sobic009G049100 Sobic009G049100 Sobic002G208301--Sobic009G049100 Sobic002G208301--Sobic001G227601 Sobic002G107700 Sobic002G107700 Sobic002G208301--Sobic002G107700 Sobic003G276400 Sobic003G276400 Sobic002G208301--Sobic003G276400 Sobic006G165501 Sobic006G165501 Sobic002G208301--Sobic006G165501 Sobic001G385132 Sobic001G385132 Sobic002G208301--Sobic001G385132 Sobic004G237900 Sobic004G237900 Sobic002G208301--Sobic004G237900 Sobic010G184201 Sobic010G184201 Sobic002G208301--Sobic010G184201 Sobic003G315900--Sobic004G087900 Sobic010G251800 Sobic010G251800 Sobic003G315900--Sobic010G251800 Sobic003G315900--Sobic001G227601 Sobic003G315900--Sobic009G106300 Sobic006G019000 Sobic006G019000 Sobic003G315900--Sobic006G019000 Sobic003G232200 Sobic003G232200 Sobic003G315900--Sobic003G232200 Sobic003G315900--Sobic009G005750 Sobic002G295550 Sobic002G295550 Sobic003G315900--Sobic002G295550 Sobic006G153550 Sobic006G153550 Sobic003G315900--Sobic006G153550
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.