Gene annotation
Transcriptome id Sobic.001G006700.2,Sobic.001G006700.3
Synonym RCD1, Sb01g000700, CEO1, ATP8, CEO
Functional annotation RCD1, putative, expressed
UniProt C5WRZ3
Pfam PF12174
Panther DB PTHR32263 PTHR32263:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32230 : WWE protein-protein interaction domain protein family
RAP-DB (Rice) LOC_Os03g63770.2,LOC_Os03g63770.3 : RCD1, putative, expressed
MaizeGDB (Corn) Zm00025a010021 , Zm00025a016300
Brachypodium PNT73769 , PNT73768 , PNT73767 , PNT73766 , KQK12036 , KQK12035
Barley HORVU5Hr1G124010.11 , HORVU5Hr1G124010.10 , HORVU5Hr1G124010.13 , HORVU5Hr1G124010.12 , HORVU1Hr1G050960.5 , HORVU1Hr1G050960.7 , HORVU1Hr1G050960.9 , HORVU1Hr1G050960.8 , HORVU1Hr1G050960.10 , HORVU1Hr1G050960.4 , HORVU1Hr1G050960.1 , HORVU1Hr1G050960.3 , HORVU1Hr1G050960.2 , HORVU5Hr1G124010.4 , HORVU5Hr1G124010.9 , HORVU5Hr1G124010.1 , HORVU5Hr1G124010.3 , HORVU5Hr1G124010.2 , HORVU5Hr1G124010.5 , HORVU5Hr1G124010.7 , HORVU5Hr1G124010.6 , HORVU5Hr1G124010.8
Wheat TraesCS1D02G199200 , TraesCS1D02G199200 , TraesCS1D02G199200 , TraesCS5D02G551800 , TraesCS5D02G551800 , TraesCS5D02G551800 , TraesCS5B02G557500 , TraesCS5B02G557500 , TraesCS5B02G557500 , TraesCS1A02G195400 , TraesCS1A02G195400 , TraesCS1A02G195400 , TraesCS1A02G195400 , TraesCS1B02G210300 , TraesCS1B02G210300 , TraesCS1B02G210300 , TraesCS1B02G210300
Populus -


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cDNA sequences
Sobic.001G006700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G193400 AGC_AGC_other_NDRh_TRCd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed K08790: STK38, serine/threonine kinase 38
2 Sobic.003G433100 MAC/Perforin domain containing protein, putative, expressed -
3 Sobic.008G180900 YIF1B, putative, expressed -
4 Sobic.009G171700 SAG20, putative, expressed -
5 Sobic.002G413000 AAA-type ATPase family protein, putative, expressed -
6 Sobic.003G248200 NLI interacting factor-like phosphatase, putative, expressed -
7 Sobic.001G290200 leucine rich repeat containing protein, expressed -
8 Sobic.006G261800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
9 Sobic.004G066200 ubiquitin fusion degradation protein, putative, expressed K14016: ubiquitin fusion degradation protein 1
10 Sobic.001G360200 novel plant SNARE 11, putative, expressed K08494: novel plant SNARE
11 Sobic.009G138100 disease resistance protein RGA3, putative, expressed -
12 Sobic.009G178600 ADP-ribosylation factor, putative, expressed K07937: ADP-ribosylation factor 1/2
K07977: Arf/Sar family, other
13 Sobic.002G424000 transcription factor, putative, expressed K14431: transcription factor TGA
14 Sobic.002G034600 zinc ion binding protein, putative, expressed -
15 Sobic.001G472600 gibberellin response modulator protein, putative, expressed -
16 Sobic.006G182200 WD domain, G-beta repeat domain containing protein, expressed -
17 Sobic.008G174300 GTPase of unknown function domain containing protein, putative, expressed K14539: large subunit GTPase 1
18 Sobic.005G105000 STE_MEKK_ste11_MAP3K.3 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
19 Sobic.001G221500 glutamyl-tRNA synthetase, cytoplasmic, putative, expressed K01885: EARS, glutamyl-tRNA synthetase
20 Sobic.004G202500 serine/threonine-protein kinase AFC2, putative, expressed K08287: dual-specificity kinase


Gene co-expression network
sample Sobic001G006700 Sobic001G006700 Sobic009G193400 Sobic009G193400 Sobic001G006700--Sobic009G193400 Sobic003G433100 Sobic003G433100 Sobic001G006700--Sobic003G433100 Sobic008G180900 Sobic008G180900 Sobic001G006700--Sobic008G180900 Sobic009G171700 Sobic009G171700 Sobic001G006700--Sobic009G171700 Sobic002G413000 Sobic002G413000 Sobic001G006700--Sobic002G413000 Sobic003G248200 Sobic003G248200 Sobic001G006700--Sobic003G248200 Sobic001G290200 Sobic001G290200 Sobic001G006700--Sobic001G290200 Sobic006G261800 Sobic006G261800 Sobic001G006700--Sobic006G261800 Sobic004G066200 Sobic004G066200 Sobic001G006700--Sobic004G066200 Sobic003G007500 Sobic003G007500 Sobic009G193400--Sobic003G007500 Sobic009G193400--Sobic003G433100 Sobic009G193400--Sobic009G171700 Sobic009G193400--Sobic008G180900 Sobic003G295400 Sobic003G295400 Sobic009G193400--Sobic003G295400 Sobic004G104900 Sobic004G104900 Sobic009G193400--Sobic004G104900 Sobic001G478300 Sobic001G478300 Sobic009G193400--Sobic001G478300 Sobic009G193400--Sobic002G413000 Sobic010G083700 Sobic010G083700 Sobic009G193400--Sobic010G083700 Sobic003G433100--Sobic009G193400 Sobic003G433100--Sobic001G478300 Sobic007G062600 Sobic007G062600 Sobic003G433100--Sobic007G062600 Sobic004G295800 Sobic004G295800 Sobic003G433100--Sobic004G295800 Sobic004G006200 Sobic004G006200 Sobic003G433100--Sobic004G006200 Sobic009G154800 Sobic009G154800 Sobic003G433100--Sobic009G154800 Sobic009G228700 Sobic009G228700 Sobic003G433100--Sobic009G228700 Sobic002G424000 Sobic002G424000 Sobic003G433100--Sobic002G424000 Sobic004G021100 Sobic004G021100 Sobic003G433100--Sobic004G021100 Sobic009G246950 Sobic009G246950 Sobic008G180900--Sobic009G246950 Sobic010G168600 Sobic010G168600 Sobic008G180900--Sobic010G168600 Sobic008G180900--Sobic009G171700 Sobic008G180900--Sobic009G193400 Sobic002G352700 Sobic002G352700 Sobic008G180900--Sobic002G352700 Sobic008G180900--Sobic001G478300 Sobic002G256300 Sobic002G256300 Sobic008G180900--Sobic002G256300 Sobic008G180900--Sobic010G083700 Sobic004G203100 Sobic004G203100 Sobic008G180900--Sobic004G203100 Sobic001G078500 Sobic001G078500 Sobic009G171700--Sobic001G078500 Sobic009G171700--Sobic010G168600 Sobic009G171700--Sobic009G246950 Sobic004G293700 Sobic004G293700 Sobic009G171700--Sobic004G293700 Sobic009G171700--Sobic010G083700 Sobic010G253800 Sobic010G253800 Sobic009G171700--Sobic010G253800 Sobic009G171700--Sobic008G180900 Sobic007G186300 Sobic007G186300 Sobic009G171700--Sobic007G186300 Sobic009G171700--Sobic002G256300 Sobic010G052800 Sobic010G052800 Sobic002G413000--Sobic010G052800 Sobic002G413000--Sobic009G193400 Sobic002G413000--Sobic004G293700 Sobic003G220600 Sobic003G220600 Sobic002G413000--Sobic003G220600 Sobic001G031600 Sobic001G031600 Sobic002G413000--Sobic001G031600 Sobic007G059900 Sobic007G059900 Sobic002G413000--Sobic007G059900 Sobic004G079100 Sobic004G079100 Sobic002G413000--Sobic004G079100 Sobic003G002400 Sobic003G002400 Sobic002G413000--Sobic003G002400 Sobic001G329100 Sobic001G329100 Sobic002G413000--Sobic001G329100 Sobic001G512700 Sobic001G512700 Sobic003G248200--Sobic001G512700 Sobic001G356600 Sobic001G356600 Sobic003G248200--Sobic001G356600 Sobic008G179700 Sobic008G179700 Sobic003G248200--Sobic008G179700 Sobic003G248200--Sobic004G066200 Sobic008G047800 Sobic008G047800 Sobic003G248200--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic003G248200--Sobic006G200600 Sobic003G081000 Sobic003G081000 Sobic003G248200--Sobic003G081000 Sobic004G274200 Sobic004G274200 Sobic003G248200--Sobic004G274200 Sobic002G297200 Sobic002G297200 Sobic003G248200--Sobic002G297200 Sobic009G137800 Sobic009G137800 Sobic001G290200--Sobic009G137800 Sobic003G119800 Sobic003G119800 Sobic001G290200--Sobic003G119800 Sobic005G046100 Sobic005G046100 Sobic001G290200--Sobic005G046100 Sobic001G351700 Sobic001G351700 Sobic001G290200--Sobic001G351700 Sobic008G025900 Sobic008G025900 Sobic001G290200--Sobic008G025900 Sobic010G260500 Sobic010G260500 Sobic001G290200--Sobic010G260500 Sobic002G324200 Sobic002G324200 Sobic001G290200--Sobic002G324200 Sobic003G081100 Sobic003G081100 Sobic001G290200--Sobic003G081100 Sobic005G167300 Sobic005G167300 Sobic001G290200--Sobic005G167300 Sobic006G261800--Sobic001G512700 Sobic001G107500 Sobic001G107500 Sobic006G261800--Sobic001G107500 Sobic007G026300 Sobic007G026300 Sobic006G261800--Sobic007G026300 Sobic004G257400 Sobic004G257400 Sobic006G261800--Sobic004G257400 Sobic006G261800--Sobic003G248200 Sobic002G350300 Sobic002G350300 Sobic006G261800--Sobic002G350300 Sobic006G082600 Sobic006G082600 Sobic006G261800--Sobic006G082600 Sobic002G262600 Sobic002G262600 Sobic006G261800--Sobic002G262600 Sobic007G167500 Sobic007G167500 Sobic006G261800--Sobic007G167500 Sobic004G066200--Sobic001G356600 Sobic004G066200--Sobic009G228700 Sobic006G101700 Sobic006G101700 Sobic004G066200--Sobic006G101700 Sobic001G080700 Sobic001G080700 Sobic004G066200--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic004G066200--Sobic001G392300 Sobic003G352200 Sobic003G352200 Sobic004G066200--Sobic003G352200 Sobic004G066200--Sobic003G248200 Sobic004G353200 Sobic004G353200 Sobic004G066200--Sobic004G353200 Sobic001G091300 Sobic001G091300 Sobic004G066200--Sobic001G091300
Octagon: transcription factors


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