Gene annotation
Transcriptome id Sobic.001G010000.1
Synonym Sb01g000980
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1B6QGR1
Pfam PF12854 PF01535
Panther DB PTHR24015 PTHR24015:SF455
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G35030 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os05g02210.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a009060
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G010000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G147600 U-box domain-containing protein, putative, expressed -
2 Sobic.006G266900 polygalacturonase inhibitor 3 precursor, putative, expressed -
3 Sobic.010G122900 cadmium tolerance factor, putative, expressed -
4 Sobic.002G257600 PPR repeat containing protein, expressed -
5 Sobic.007G216401 - -
6 Sobic.001G311800 phosphate-induced protein 1 conserved region domain containing protein, expressed -
7 Sobic.002G239800 expressed protein K19307: 25S rRNA (uracil2634-N3)-methyltransferase
8 Sobic.001G298200 - -
9 Sobic.001G256400 pentatricopeptide, putative, expressed -
10 Sobic.010G088200 pentatricopeptide, putative, expressed -
11 Sobic.003G384100 ZIP4/SPO22, putative, expressed -
12 Sobic.006G219801 - -
13 Sobic.003G033400 3-5 exonuclease domain-containing protein, putative, expressed -
14 Sobic.010G098700 hhH-GPD superfamily base excision DNA repair protein, putative, expressed K10773: endonuclease III
15 Sobic.006G004800 expressed protein -
16 Sobic.010G009100 DNAJ heat shock N-terminal domain-containing protein, putative, expressed -
17 Sobic.002G098600 CRR4, putative, expressed -
18 Sobic.003G154900 - -
19 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
20 Sobic.002G074500 shugoshin-1, putative, expressed -


Gene co-expression network
sample Sobic001G010000 Sobic001G010000 Sobic004G147600 Sobic004G147600 Sobic001G010000--Sobic004G147600 Sobic006G266900 Sobic006G266900 Sobic001G010000--Sobic006G266900 Sobic010G122900 Sobic010G122900 Sobic001G010000--Sobic010G122900 Sobic002G257600 Sobic002G257600 Sobic001G010000--Sobic002G257600 Sobic007G216401 Sobic007G216401 Sobic001G010000--Sobic007G216401 Sobic001G311800 Sobic001G311800 Sobic001G010000--Sobic001G311800 Sobic002G239800 Sobic002G239800 Sobic001G010000--Sobic002G239800 Sobic001G298200 Sobic001G298200 Sobic001G010000--Sobic001G298200 Sobic001G256400 Sobic001G256400 Sobic001G010000--Sobic001G256400 Sobic004G147600--Sobic001G298200 Sobic004G147600--Sobic010G122900 Sobic006G004800 Sobic006G004800 Sobic004G147600--Sobic006G004800 Sobic005G098501 Sobic005G098501 Sobic004G147600--Sobic005G098501 Sobic008G163750 Sobic008G163750 Sobic004G147600--Sobic008G163750 Sobic004G147600--Sobic001G010000 Sobic003G154900 Sobic003G154900 Sobic004G147600--Sobic003G154900 Sobic002G084200 Sobic002G084200 Sobic004G147600--Sobic002G084200 Sobic009G242900 Sobic009G242900 Sobic004G147600--Sobic009G242900 Sobic006G266900--Sobic007G216401 Sobic007G152701 Sobic007G152701 Sobic006G266900--Sobic007G152701 Sobic010G236950 Sobic010G236950 Sobic006G266900--Sobic010G236950 Sobic003G033400 Sobic003G033400 Sobic006G266900--Sobic003G033400 Sobic010G263051 Sobic010G263051 Sobic006G266900--Sobic010G263051 Sobic010G116200 Sobic010G116200 Sobic006G266900--Sobic010G116200 Sobic007G048000 Sobic007G048000 Sobic006G266900--Sobic007G048000 Sobic007G069900 Sobic007G069900 Sobic006G266900--Sobic007G069900 Sobic006G037050 Sobic006G037050 Sobic006G266900--Sobic006G037050 Sobic001G258500 Sobic001G258500 Sobic010G122900--Sobic001G258500 Sobic008G181701 Sobic008G181701 Sobic010G122900--Sobic008G181701 Sobic008G175966 Sobic008G175966 Sobic010G122900--Sobic008G175966 Sobic009G172300 Sobic009G172300 Sobic010G122900--Sobic009G172300 Sobic002G045900 Sobic002G045900 Sobic010G122900--Sobic002G045900 Sobic006G062466 Sobic006G062466 Sobic010G122900--Sobic006G062466 Sobic006G257250 Sobic006G257250 Sobic010G122900--Sobic006G257250 Sobic004G056350 Sobic004G056350 Sobic010G122900--Sobic004G056350 Sobic004G311550 Sobic004G311550 Sobic010G122900--Sobic004G311550 Sobic003G232500 Sobic003G232500 Sobic002G257600--Sobic003G232500 Sobic001G159500 Sobic001G159500 Sobic002G257600--Sobic001G159500 Sobic004G312000 Sobic004G312000 Sobic002G257600--Sobic004G312000 Sobic003G384750 Sobic003G384750 Sobic002G257600--Sobic003G384750 Sobic001G444200 Sobic001G444200 Sobic002G257600--Sobic001G444200 Sobic004G200100 Sobic004G200100 Sobic002G257600--Sobic004G200100 Sobic003G394000 Sobic003G394000 Sobic002G257600--Sobic003G394000 Sobic001G179500 Sobic001G179500 Sobic002G257600--Sobic001G179500 Sobic001G069300 Sobic001G069300 Sobic002G257600--Sobic001G069300 Sobic001G476201 Sobic001G476201 Sobic007G216401--Sobic001G476201 Sobic007G216401--Sobic006G266900 Sobic007G216401--Sobic002G045900 Sobic003G324900 Sobic003G324900 Sobic007G216401--Sobic003G324900 Sobic006G024101 Sobic006G024101 Sobic007G216401--Sobic006G024101 Sobic003G294550 Sobic003G294550 Sobic007G216401--Sobic003G294550 Sobic007G216401--Sobic010G263051 Sobic010G180300 Sobic010G180300 Sobic007G216401--Sobic010G180300 Sobic007G216401--Sobic010G116200 Sobic001G311800--Sobic004G147600 Sobic003G212800 Sobic003G212800 Sobic001G311800--Sobic003G212800 Sobic003G187800 Sobic003G187800 Sobic001G311800--Sobic003G187800 Sobic003G021000 Sobic003G021000 Sobic001G311800--Sobic003G021000 Sobic003G293800 Sobic003G293800 Sobic001G311800--Sobic003G293800 Sobic004G258200 Sobic004G258200 Sobic001G311800--Sobic004G258200 Sobic006G069400 Sobic006G069400 Sobic001G311800--Sobic006G069400 Sobic001G227700 Sobic001G227700 Sobic001G311800--Sobic001G227700 Sobic007G124700 Sobic007G124700 Sobic001G311800--Sobic007G124700 Sobic002G074500 Sobic002G074500 Sobic002G239800--Sobic002G074500 Sobic003G217566 Sobic003G217566 Sobic002G239800--Sobic003G217566 Sobic003G242300 Sobic003G242300 Sobic002G239800--Sobic003G242300 Sobic010G135700 Sobic010G135700 Sobic002G239800--Sobic010G135700 Sobic001G355850 Sobic001G355850 Sobic002G239800--Sobic001G355850 Sobic002G428301 Sobic002G428301 Sobic002G239800--Sobic002G428301 Sobic001G538275 Sobic001G538275 Sobic002G239800--Sobic001G538275 Sobic006G192000 Sobic006G192000 Sobic002G239800--Sobic006G192000 Sobic008G191800 Sobic008G191800 Sobic002G239800--Sobic008G191800 Sobic010G068051 Sobic010G068051 Sobic001G298200--Sobic010G068051 Sobic009G064700 Sobic009G064700 Sobic001G298200--Sobic009G064700 Sobic006G031866 Sobic006G031866 Sobic001G298200--Sobic006G031866 Sobic001G463700 Sobic001G463700 Sobic001G298200--Sobic001G463700 Sobic001G135000 Sobic001G135000 Sobic001G298200--Sobic001G135000 Sobic002G028901 Sobic002G028901 Sobic001G298200--Sobic002G028901 Sobic007G171300 Sobic007G171300 Sobic001G298200--Sobic007G171300 Sobic001G298200--Sobic004G147600 Sobic003G193400 Sobic003G193400 Sobic001G298200--Sobic003G193400 Sobic009G238700 Sobic009G238700 Sobic001G256400--Sobic009G238700 Sobic010G066900 Sobic010G066900 Sobic001G256400--Sobic010G066900 Sobic001G347100 Sobic001G347100 Sobic001G256400--Sobic001G347100 Sobic002G385200 Sobic002G385200 Sobic001G256400--Sobic002G385200 Sobic001G412200 Sobic001G412200 Sobic001G256400--Sobic001G412200 Sobic007G179600 Sobic007G179600 Sobic001G256400--Sobic007G179600 Sobic003G203100 Sobic003G203100 Sobic001G256400--Sobic003G203100 Sobic004G128666 Sobic004G128666 Sobic001G256400--Sobic004G128666 Sobic003G299200 Sobic003G299200 Sobic001G256400--Sobic003G299200
Octagon: transcription factors


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