Gene annotation
Transcriptome id Sobic.002G098600.1
Synonym CRR4, Sb02g008110
Functional annotation CRR4, putative, expressed
UniProt A0A1B6QA76
Pfam PF12854 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF442
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G45350 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g15640.1 : CRR4, putative, expressed
MaizeGDB (Corn) Zm00025a013621
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G184300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
2 Sobic.001G478900 pentatricopeptide, putative, expressed -
3 Sobic.004G256900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
4 Sobic.002G172500 tetratricopeptide-like helical, putative, expressed -
5 Sobic.004G025700 PPR repeat domain containing protein, putative, expressed -
6 Sobic.002G400151 - -
7 Sobic.001G436600 pentatricopeptide, putative, expressed -
8 Sobic.004G241000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
9 Sobic.006G095000 PPR repeat domain containing protein, putative, expressed -
10 Sobic.001G486900 exostosin family protein, putative, expressed -
11 Sobic.006G262800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
12 Sobic.010G068900 glutamate receptor 2.6 precursor, putative, expressed K05387: glutamate receptor, ionotropic, plant
13 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
14 Sobic.008G095900 ATP binding protein, putative, expressed K17592: sacsin
15 Sobic.002G154800 glycosyl transferase, group 1 domain containing protein, expressed -
16 Sobic.008G082800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
17 Sobic.010G123100 transporter-related, putative, expressed -
18 Sobic.006G085800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
19 Sobic.010G161525 - -
20 Sobic.010G190900 pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic002G098600 Sobic002G098600 Sobic003G184300 Sobic003G184300 Sobic002G098600--Sobic003G184300 Sobic001G478900 Sobic001G478900 Sobic002G098600--Sobic001G478900 Sobic004G256900 Sobic004G256900 Sobic002G098600--Sobic004G256900 Sobic002G172500 Sobic002G172500 Sobic002G098600--Sobic002G172500 Sobic004G025700 Sobic004G025700 Sobic002G098600--Sobic004G025700 Sobic002G400151 Sobic002G400151 Sobic002G098600--Sobic002G400151 Sobic001G436600 Sobic001G436600 Sobic002G098600--Sobic001G436600 Sobic004G241000 Sobic004G241000 Sobic002G098600--Sobic004G241000 Sobic006G095000 Sobic006G095000 Sobic002G098600--Sobic006G095000 Sobic003G184300--Sobic004G256900 Sobic003G184300--Sobic006G095000 Sobic002G192900 Sobic002G192900 Sobic003G184300--Sobic002G192900 Sobic001G361200 Sobic001G361200 Sobic003G184300--Sobic001G361200 Sobic003G184300--Sobic001G478900 Sobic010G068900 Sobic010G068900 Sobic003G184300--Sobic010G068900 Sobic003G184300--Sobic002G172500 Sobic010G188900 Sobic010G188900 Sobic003G184300--Sobic010G188900 Sobic004G064600 Sobic004G064600 Sobic003G184300--Sobic004G064600 Sobic008G095900 Sobic008G095900 Sobic001G478900--Sobic008G095900 Sobic006G262800 Sobic006G262800 Sobic001G478900--Sobic006G262800 Sobic001G478900--Sobic004G256900 Sobic001G478900--Sobic003G184300 Sobic009G047700 Sobic009G047700 Sobic001G478900--Sobic009G047700 Sobic004G051600 Sobic004G051600 Sobic001G478900--Sobic004G051600 Sobic001G478900--Sobic010G068900 Sobic009G253101 Sobic009G253101 Sobic001G478900--Sobic009G253101 Sobic010G123100 Sobic010G123100 Sobic001G478900--Sobic010G123100 Sobic004G256900--Sobic003G184300 Sobic004G256900--Sobic004G241000 Sobic004G256900--Sobic010G068900 Sobic004G256900--Sobic002G172500 Sobic006G069100 Sobic006G069100 Sobic004G256900--Sobic006G069100 Sobic004G256900--Sobic006G262800 Sobic010G190900 Sobic010G190900 Sobic004G256900--Sobic010G190900 Sobic004G256900--Sobic001G478900 Sobic008G163400 Sobic008G163400 Sobic004G256900--Sobic008G163400 Sobic002G172500--Sobic010G068900 Sobic008G082800 Sobic008G082800 Sobic002G172500--Sobic008G082800 Sobic002G172500--Sobic004G256900 Sobic002G172500--Sobic006G262800 Sobic002G172500--Sobic004G241000 Sobic006G085900 Sobic006G085900 Sobic002G172500--Sobic006G085900 Sobic009G155400 Sobic009G155400 Sobic002G172500--Sobic009G155400 Sobic002G172500--Sobic003G184300 Sobic002G172500--Sobic008G163400 Sobic003G394500 Sobic003G394500 Sobic004G025700--Sobic003G394500 Sobic004G025700--Sobic008G095900 Sobic006G191000 Sobic006G191000 Sobic004G025700--Sobic006G191000 Sobic010G086300 Sobic010G086300 Sobic004G025700--Sobic010G086300 Sobic007G226800 Sobic007G226800 Sobic004G025700--Sobic007G226800 Sobic001G486900 Sobic001G486900 Sobic004G025700--Sobic001G486900 Sobic010G112600 Sobic010G112600 Sobic004G025700--Sobic010G112600 Sobic004G025700--Sobic002G400151 Sobic004G194400 Sobic004G194400 Sobic004G025700--Sobic004G194400 Sobic006G106300 Sobic006G106300 Sobic002G400151--Sobic006G106300 Sobic001G043200 Sobic001G043200 Sobic002G400151--Sobic001G043200 Sobic003G143800 Sobic003G143800 Sobic002G400151--Sobic003G143800 Sobic003G409900 Sobic003G409900 Sobic002G400151--Sobic003G409900 Sobic001G205100 Sobic001G205100 Sobic002G400151--Sobic001G205100 Sobic003G021600 Sobic003G021600 Sobic002G400151--Sobic003G021600 Sobic002G400151--Sobic003G394500 Sobic001G474400 Sobic001G474400 Sobic002G400151--Sobic001G474400 Sobic002G400151--Sobic004G025700 Sobic001G436600--Sobic004G256900 Sobic001G436600--Sobic006G085900 Sobic001G436600--Sobic006G262800 Sobic009G154900 Sobic009G154900 Sobic001G436600--Sobic009G154900 Sobic001G436600--Sobic004G241000 Sobic006G085800 Sobic006G085800 Sobic001G436600--Sobic006G085800 Sobic001G436600--Sobic010G068900 Sobic004G215600 Sobic004G215600 Sobic001G436600--Sobic004G215600 Sobic001G436600--Sobic006G095000 Sobic004G241000--Sobic008G163400 Sobic004G241000--Sobic004G256900 Sobic004G241000--Sobic006G069100 Sobic004G241000--Sobic010G190900 Sobic004G241000--Sobic010G068900 Sobic003G239000 Sobic003G239000 Sobic004G241000--Sobic003G239000 Sobic004G241000--Sobic006G085900 Sobic004G241000--Sobic002G172500 Sobic004G241000--Sobic009G155400 Sobic006G095000--Sobic003G184300 Sobic006G095000--Sobic002G192900 Sobic006G095000--Sobic004G064600 Sobic008G047500 Sobic008G047500 Sobic006G095000--Sobic008G047500 Sobic006G095000--Sobic004G215600 Sobic001G323400 Sobic001G323400 Sobic006G095000--Sobic001G323400 Sobic002G308000 Sobic002G308000 Sobic006G095000--Sobic002G308000 Sobic003G045000 Sobic003G045000 Sobic006G095000--Sobic003G045000 Sobic009G120400 Sobic009G120400 Sobic006G095000--Sobic009G120400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.