Gene annotation
Transcriptome id Sobic.001G029000.1
Synonym Sb01g002730
Functional annotation mTERF family protein, expressed
UniProt A0A1Z5S424
Pfam PF02536
Panther DB PTHR13068 PTHR13068:SF17
NCBI CDD -
KEGG Orthology K15032; mTERF domain-containing protein, mitochondrial
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005739mitochondrion GO:0003690double-stranded DNA binding


Orthologs (automatic annotation)
TAIR AT5G07900 : Mitochondrial transcription termination factor family protein
RAP-DB (Rice) LOC_Os11g14130.1 : mTERF family protein, expressed
MaizeGDB (Corn) Zm00025a008824 , Zm00025a008814
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
2 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
3 Sobic.007G152400 eukaryotic translation initiation factor 6, putative, expressed K03264: translation initiation factor 6
4 Sobic.002G007100 eukaryotic translation initiation factor 5A, putative, expressed K03263: translation initiation factor 5A
5 Sobic.006G231700 LSM domain containing protein, expressed K12626: U6 snRNA-associated Sm-like protein LSm7
6 Sobic.010G267900 expressed protein -
7 Sobic.001G094500 tentative name(PubMedID : 31536532)@Core histone H2A/H2B/H3/H4 domain containing protein, putative, expressed K11251: histone H2A
8 Sobic.001G402300 RNA recognition motif containing protein, putative, expressed K11094: U2 small nuclear ribonucleoprotein B''
9 Sobic.002G380000 TRM112, putative, expressed K15448: TRM112, multifunctional methyltransferase subunit TRM112
10 Sobic.005G091700 60S ribosomal protein L18a, putative, expressed K02882: RP-L18Ae, large subunit ribosomal protein L18Ae
11 Sobic.008G094600 - -
12 Sobic.010G180700 protein phosphatase 2C, putative, expressed K14803: protein phosphatase PTC2/3
13 Sobic.003G129800 keratinocytes-associated protein 2, putative, expressed -
14 Sobic.007G217400 COP9 signalosome complex subunit 6a, putative, expressed K12179: COPS6, COP9 signalosome complex subunit 6
15 Sobic.001G517600 ribosomal L18p/L5e family protein, putative, expressed K02932: RP-L5e, large subunit ribosomal protein L5e
16 Sobic.004G032000 peptidase, T1 family, putative, expressed K02725: 20S proteasome subunit alpha 6
17 Sobic.005G111100 SKP1-like protein 1B, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
18 Sobic.010G013900 DAG protein, chloroplast precursor, putative, expressed -
19 Sobic.001G398600 anaphase-promoting complex subunit 11, putative, expressed K03358: anaphase-promoting complex subunit 11
20 Sobic.001G034600 zinc knuckle domain containing protein, expressed K09250: cellular nucleic acid-binding protein


Gene co-expression network
sample Sobic001G029000 Sobic001G029000 Sobic001G532100 Sobic001G532100 Sobic001G029000--Sobic001G532100 Sobic008G137600 Sobic008G137600 Sobic001G029000--Sobic008G137600 Sobic007G152400 Sobic007G152400 Sobic001G029000--Sobic007G152400 Sobic002G007100 Sobic002G007100 Sobic001G029000--Sobic002G007100 Sobic006G231700 Sobic006G231700 Sobic001G029000--Sobic006G231700 Sobic010G267900 Sobic010G267900 Sobic001G029000--Sobic010G267900 Sobic001G094500 Sobic001G094500 Sobic001G029000--Sobic001G094500 Sobic001G402300 Sobic001G402300 Sobic001G029000--Sobic001G402300 Sobic002G380000 Sobic002G380000 Sobic001G029000--Sobic002G380000 Sobic001G532100--Sobic008G137600 Sobic001G036700 Sobic001G036700 Sobic001G532100--Sobic001G036700 Sobic010G193800 Sobic010G193800 Sobic001G532100--Sobic010G193800 Sobic001G285300 Sobic001G285300 Sobic001G532100--Sobic001G285300 Sobic001G294900 Sobic001G294900 Sobic001G532100--Sobic001G294900 Sobic001G532100--Sobic007G152400 Sobic006G225300 Sobic006G225300 Sobic001G532100--Sobic006G225300 Sobic003G043400 Sobic003G043400 Sobic001G532100--Sobic003G043400 Sobic003G273400 Sobic003G273400 Sobic001G532100--Sobic003G273400 Sobic008G137600--Sobic001G532100 Sobic008G137600--Sobic001G402300 Sobic008G137600--Sobic001G294900 Sobic002G428200 Sobic002G428200 Sobic008G137600--Sobic002G428200 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic001G502200 Sobic001G502200 Sobic008G137600--Sobic001G502200 Sobic005G111100 Sobic005G111100 Sobic007G152400--Sobic005G111100 Sobic007G091000 Sobic007G091000 Sobic007G152400--Sobic007G091000 Sobic007G152400--Sobic002G428200 Sobic002G257400 Sobic002G257400 Sobic007G152400--Sobic002G257400 Sobic001G128400 Sobic001G128400 Sobic007G152400--Sobic001G128400 Sobic001G481700 Sobic001G481700 Sobic007G152400--Sobic001G481700 Sobic007G152400--Sobic008G137600 Sobic004G204800 Sobic004G204800 Sobic007G152400--Sobic004G204800 Sobic002G331300 Sobic002G331300 Sobic007G152400--Sobic002G331300 Sobic005G157200 Sobic005G157200 Sobic002G007100--Sobic005G157200 Sobic003G025200 Sobic003G025200 Sobic002G007100--Sobic003G025200 Sobic010G029400 Sobic010G029400 Sobic002G007100--Sobic010G029400 Sobic008G058300 Sobic008G058300 Sobic002G007100--Sobic008G058300 Sobic002G406500 Sobic002G406500 Sobic002G007100--Sobic002G406500 Sobic004G196400 Sobic004G196400 Sobic002G007100--Sobic004G196400 Sobic006G201500 Sobic006G201500 Sobic002G007100--Sobic006G201500 Sobic003G280700 Sobic003G280700 Sobic002G007100--Sobic003G280700 Sobic006G081100 Sobic006G081100 Sobic002G007100--Sobic006G081100 Sobic006G231700--Sobic005G111100 Sobic007G163700 Sobic007G163700 Sobic006G231700--Sobic007G163700 Sobic006G231700--Sobic001G094500 Sobic006G013900 Sobic006G013900 Sobic006G231700--Sobic006G013900 Sobic003G358300 Sobic003G358300 Sobic006G231700--Sobic003G358300 Sobic006G231700--Sobic001G128400 Sobic003G129800 Sobic003G129800 Sobic006G231700--Sobic003G129800 Sobic001G517600 Sobic001G517600 Sobic006G231700--Sobic001G517600 Sobic004G137900 Sobic004G137900 Sobic006G231700--Sobic004G137900 Sobic010G267900--Sobic007G163700 Sobic010G267900--Sobic006G231700 Sobic001G529000 Sobic001G529000 Sobic010G267900--Sobic001G529000 Sobic003G055500 Sobic003G055500 Sobic010G267900--Sobic003G055500 Sobic006G052400 Sobic006G052400 Sobic010G267900--Sobic006G052400 Sobic010G267900--Sobic005G111100 Sobic010G267900--Sobic003G129800 Sobic004G066800 Sobic004G066800 Sobic010G267900--Sobic004G066800 Sobic010G267900--Sobic008G058300 Sobic001G094500--Sobic006G231700 Sobic001G094500--Sobic001G128400 Sobic001G094500--Sobic005G111100 Sobic004G265700 Sobic004G265700 Sobic001G094500--Sobic004G265700 Sobic002G279000 Sobic002G279000 Sobic001G094500--Sobic002G279000 Sobic001G094500--Sobic001G532100 Sobic001G094500--Sobic007G152400 Sobic001G094500--Sobic001G529000 Sobic001G094500--Sobic007G163700 Sobic001G402300--Sobic008G137600 Sobic001G226100 Sobic001G226100 Sobic001G402300--Sobic001G226100 Sobic004G141700 Sobic004G141700 Sobic001G402300--Sobic004G141700 Sobic010G251100 Sobic010G251100 Sobic001G402300--Sobic010G251100 Sobic007G118000 Sobic007G118000 Sobic001G402300--Sobic007G118000 Sobic009G232400 Sobic009G232400 Sobic001G402300--Sobic009G232400 Sobic002G413400 Sobic002G413400 Sobic001G402300--Sobic002G413400 Sobic001G402300--Sobic001G529000 Sobic001G402300--Sobic001G285300 Sobic002G380000--Sobic005G157200 Sobic002G380000--Sobic008G058300 Sobic002G380000--Sobic010G029400 Sobic002G022400 Sobic002G022400 Sobic002G380000--Sobic002G022400 Sobic002G380000--Sobic002G007100 Sobic004G152400 Sobic004G152400 Sobic002G380000--Sobic004G152400 Sobic004G002350 Sobic004G002350 Sobic002G380000--Sobic004G002350 Sobic002G380000--Sobic006G052400 Sobic002G380000--Sobic003G025200
Octagon: transcription factors


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