Gene annotation
Transcriptome id Sobic.001G041700.4,Sobic.001G041700.3
Synonym Sb01g003850
Functional annotation BRCA1 C Terminus domain containing protein, expressed
UniProt A0A1Z5S4S2 , A0A1Z5S4U6
Pfam -
Panther DB -
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g59650.1 : BRCA1 C Terminus domain containing protein, expressed
MaizeGDB (Corn) Zm00025a008736
Brachypodium KQK12531 , PNT73934 , PNT73932 , PNT73933
Barley -
Wheat TraesCS5B02G477900 , TraesCS5D02G479000 , TraesCS5A02G466200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G155500 pentatricopeptide containing protein, putative, expressed -
2 Sobic.001G255800 CPuORF15 - conserved peptide uORF-containing transcript, expressed -
3 Sobic.003G012000 GTPase of unknown function domain containing protein, putative, expressed -
4 Sobic.003G296900 expressed protein -
5 Sobic.003G256800 RNA polymerase III subunit RPC82 family protein, putative, expressed K03023: RPC3, DNA-directed RNA polymerase III subunit RPC3
6 Sobic.003G146600 pumilio-family RNA binding repeat containing protein, expressed K14790: nucleolar protein 9
7 Sobic.003G308500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed -
8 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
9 Sobic.002G060700 OsFBX237 - F-box domain containing protein, expressed -
10 Sobic.009G234700 protein of unknown function DUF1296 domain containing protein, expressed -
11 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
12 Sobic.002G241600 - -
13 Sobic.001G125500 ethylene-insensitive protein, putative, expressed K14513: ethylene-insensitive protein 2
14 Sobic.009G254100 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
15 Sobic.005G026400 pentatricopeptide repeat domain containing protein, putative, expressed -
16 Sobic.002G227500 protein transport protein, putative, expressed K14006: protein transport protein SEC23
17 Sobic.006G080400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11851: ubiquitin carboxyl-terminal hydrolase 30
18 Sobic.006G275000 tubulin/FtsZ domain containing protein, putative, expressed K03531: cell division protein FtsZ
19 Sobic.005G024400 WD domain, G-beta repeat domain containing protein, expressed -
20 Sobic.003G230600 transcription factor X1, putative, expressed -


Gene co-expression network
sample Sobic001G041700 Sobic001G041700 Sobic007G155500 Sobic007G155500 Sobic001G041700--Sobic007G155500 Sobic001G255800 Sobic001G255800 Sobic001G041700--Sobic001G255800 Sobic003G012000 Sobic003G012000 Sobic001G041700--Sobic003G012000 Sobic003G296900 Sobic003G296900 Sobic001G041700--Sobic003G296900 Sobic003G256800 Sobic003G256800 Sobic001G041700--Sobic003G256800 Sobic003G146600 Sobic003G146600 Sobic001G041700--Sobic003G146600 Sobic003G308500 Sobic003G308500 Sobic001G041700--Sobic003G308500 Sobic006G166200 Sobic006G166200 Sobic001G041700--Sobic006G166200 Sobic002G060700 Sobic002G060700 Sobic001G041700--Sobic002G060700 Sobic003G143800 Sobic003G143800 Sobic007G155500--Sobic003G143800 Sobic010G114900 Sobic010G114900 Sobic007G155500--Sobic010G114900 Sobic001G453000 Sobic001G453000 Sobic007G155500--Sobic001G453000 Sobic006G125500 Sobic006G125500 Sobic007G155500--Sobic006G125500 Sobic007G155500--Sobic006G166200 Sobic008G054600 Sobic008G054600 Sobic007G155500--Sobic008G054600 Sobic002G179400 Sobic002G179400 Sobic007G155500--Sobic002G179400 Sobic005G026400 Sobic005G026400 Sobic007G155500--Sobic005G026400 Sobic008G124800 Sobic008G124800 Sobic007G155500--Sobic008G124800 Sobic003G039000 Sobic003G039000 Sobic001G255800--Sobic003G039000 Sobic001G065100 Sobic001G065100 Sobic001G255800--Sobic001G065100 Sobic004G053500 Sobic004G053500 Sobic001G255800--Sobic004G053500 Sobic002G401500 Sobic002G401500 Sobic001G255800--Sobic002G401500 Sobic001G255800--Sobic003G296900 Sobic005G062200 Sobic005G062200 Sobic001G255800--Sobic005G062200 Sobic008G088872 Sobic008G088872 Sobic001G255800--Sobic008G088872 Sobic001G263600 Sobic001G263600 Sobic001G255800--Sobic001G263600 Sobic003G171400 Sobic003G171400 Sobic001G255800--Sobic003G171400 Sobic010G059500 Sobic010G059500 Sobic003G012000--Sobic010G059500 Sobic003G012000--Sobic003G308500 Sobic001G393900 Sobic001G393900 Sobic003G012000--Sobic001G393900 Sobic003G012000--Sobic003G146600 Sobic004G096400 Sobic004G096400 Sobic003G012000--Sobic004G096400 Sobic001G405600 Sobic001G405600 Sobic003G012000--Sobic001G405600 Sobic003G043000 Sobic003G043000 Sobic003G012000--Sobic003G043000 Sobic006G234700 Sobic006G234700 Sobic003G012000--Sobic006G234700 Sobic003G012000--Sobic003G256800 Sobic003G296900--Sobic003G043000 Sobic003G296900--Sobic001G065100 Sobic003G296900--Sobic004G053500 Sobic003G296900--Sobic003G308500 Sobic004G265500 Sobic004G265500 Sobic003G296900--Sobic004G265500 Sobic003G241700 Sobic003G241700 Sobic003G296900--Sobic003G241700 Sobic003G296900--Sobic001G255800 Sobic010G000800 Sobic010G000800 Sobic003G296900--Sobic010G000800 Sobic004G131300 Sobic004G131300 Sobic003G296900--Sobic004G131300 Sobic009G254100 Sobic009G254100 Sobic003G256800--Sobic009G254100 Sobic002G227500 Sobic002G227500 Sobic003G256800--Sobic002G227500 Sobic003G021600 Sobic003G021600 Sobic003G256800--Sobic003G021600 Sobic003G256800--Sobic003G012000 Sobic006G029100 Sobic006G029100 Sobic003G256800--Sobic006G029100 Sobic002G296400 Sobic002G296400 Sobic003G256800--Sobic002G296400 Sobic002G363800 Sobic002G363800 Sobic003G256800--Sobic002G363800 Sobic001G097900 Sobic001G097900 Sobic003G256800--Sobic001G097900 Sobic002G398700 Sobic002G398700 Sobic003G256800--Sobic002G398700 Sobic003G146600--Sobic003G308500 Sobic004G224600 Sobic004G224600 Sobic003G146600--Sobic004G224600 Sobic006G002800 Sobic006G002800 Sobic003G146600--Sobic006G002800 Sobic002G235200 Sobic002G235200 Sobic003G146600--Sobic002G235200 Sobic001G145400 Sobic001G145400 Sobic003G146600--Sobic001G145400 Sobic002G150700 Sobic002G150700 Sobic003G146600--Sobic002G150700 Sobic003G146600--Sobic001G065100 Sobic003G146600--Sobic003G039000 Sobic003G146600--Sobic003G012000 Sobic003G308500--Sobic003G146600 Sobic003G308500--Sobic006G125500 Sobic003G308500--Sobic003G296900 Sobic003G308500--Sobic006G002800 Sobic004G019200 Sobic004G019200 Sobic003G308500--Sobic004G019200 Sobic002G371600 Sobic002G371600 Sobic003G308500--Sobic002G371600 Sobic003G308500--Sobic003G012000 Sobic003G308500--Sobic001G145400 Sobic006G245900 Sobic006G245900 Sobic003G308500--Sobic006G245900 Sobic005G133800 Sobic005G133800 Sobic006G166200--Sobic005G133800 Sobic006G166200--Sobic004G053500 Sobic006G166200--Sobic008G124800 Sobic003G405500 Sobic003G405500 Sobic006G166200--Sobic003G405500 Sobic006G224800 Sobic006G224800 Sobic006G166200--Sobic006G224800 Sobic006G166200--Sobic001G145400 Sobic006G166200--Sobic010G059500 Sobic006G166200--Sobic002G235200 Sobic009G201700 Sobic009G201700 Sobic006G166200--Sobic009G201700 Sobic002G241600 Sobic002G241600 Sobic002G060700--Sobic002G241600 Sobic001G014300 Sobic001G014300 Sobic002G060700--Sobic001G014300 Sobic002G060700--Sobic003G043000 Sobic002G060600 Sobic002G060600 Sobic002G060700--Sobic002G060600 Sobic005G163100 Sobic005G163100 Sobic002G060700--Sobic005G163100 Sobic009G260650 Sobic009G260650 Sobic002G060700--Sobic009G260650 Sobic009G228000 Sobic009G228000 Sobic002G060700--Sobic009G228000 Sobic002G386600 Sobic002G386600 Sobic002G060700--Sobic002G386600 Sobic002G060700--Sobic002G227500
Octagon: transcription factors


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