Gene annotation
Transcriptome id Sobic.005G024400.1
Synonym
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt A0A1Z5RHA4
Pfam PF12265 PF00400
Panther DB PTHR22850
NCBI CDD KOG0302; Ribosome Assembly protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G19540 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os12g03822.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a038055 , Zm00025a028957
Brachypodium KQJ89556
Barley HORVU4Hr1G026330.1 , HORVU4Hr1G026330.2 , HORVU4Hr1G026330.3 , HORVU4Hr1G026330.4 , HORVU4Hr1G026330.5 , HORVU4Hr1G026330.6 , HORVU4Hr1G026330.7 , HORVU4Hr1G026330.8 , HORVU4Hr1G026330.9 , HORVU4Hr1G026330.10 , HORVU4Hr1G026330.11
Wheat TraesCS4D02G126000 , TraesCS4A02G187400 , TraesCS4B02G131200 , TraesCS4B02G131200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G004100 WD domain, G-beta repeat domain containing protein, expressed -
2 Sobic.005G108000 - -
3 Sobic.004G031300 PPR repeat domain containing protein, putative, expressed -
4 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
5 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
6 Sobic.010G080550 - -
7 Sobic.001G393900 FAD binding domain containing protein, expressed -
8 Sobic.006G245900 FAR1 family protein, expressed -
9 Sobic.004G321700 mitochondrial transcription termination factor family protein, putative, expressed K15032: mTERF domain-containing protein, mitochondrial
10 Sobic.001G542450 - -
11 Sobic.006G080400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11851: ubiquitin carboxyl-terminal hydrolase 30
12 Sobic.002G127200 CRAL/TRIO domain containing protein, expressed -
13 Sobic.002G369701 - K06877: DEAD/DEAH box helicase domain-containing protein
14 Sobic.007G187600 pentatricopeptide, putative, expressed -
15 Sobic.006G002800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed K15332: tRNA (uracil-5-)-methyltransferase
16 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
17 Sobic.001G408600 RNA pseudouridine synthase, putative, expressed -
18 Sobic.004G123400 MYB family transcription factor, putative, expressed K09420: MYB, transcriptional activator Myb
19 Sobic.007G155500 pentatricopeptide containing protein, putative, expressed -
20 Sobic.006G154100 mRNA cap guanine-N7 methyltransferase 2, putative, expressed K00565: mRNA (guanine-N7-)-methyltransferase


Gene co-expression network
sample Sobic005G024400 Sobic005G024400 Sobic001G004100 Sobic001G004100 Sobic005G024400--Sobic001G004100 Sobic005G108000 Sobic005G108000 Sobic005G024400--Sobic005G108000 Sobic004G031300 Sobic004G031300 Sobic005G024400--Sobic004G031300 Sobic006G166200 Sobic006G166200 Sobic005G024400--Sobic006G166200 Sobic002G235200 Sobic002G235200 Sobic005G024400--Sobic002G235200 Sobic010G080550 Sobic010G080550 Sobic005G024400--Sobic010G080550 Sobic001G393900 Sobic001G393900 Sobic005G024400--Sobic001G393900 Sobic006G245900 Sobic006G245900 Sobic005G024400--Sobic006G245900 Sobic004G321700 Sobic004G321700 Sobic005G024400--Sobic004G321700 Sobic001G004100--Sobic004G031300 Sobic007G187600 Sobic007G187600 Sobic001G004100--Sobic007G187600 Sobic001G013300 Sobic001G013300 Sobic001G004100--Sobic001G013300 Sobic009G113100 Sobic009G113100 Sobic001G004100--Sobic009G113100 Sobic009G255600 Sobic009G255600 Sobic001G004100--Sobic009G255600 Sobic001G408600 Sobic001G408600 Sobic001G004100--Sobic001G408600 Sobic001G373000 Sobic001G373000 Sobic001G004100--Sobic001G373000 Sobic002G142700 Sobic002G142700 Sobic001G004100--Sobic002G142700 Sobic001G034500 Sobic001G034500 Sobic001G004100--Sobic001G034500 Sobic001G346900 Sobic001G346900 Sobic005G108000--Sobic001G346900 Sobic002G127200 Sobic002G127200 Sobic005G108000--Sobic002G127200 Sobic004G224600 Sobic004G224600 Sobic005G108000--Sobic004G224600 Sobic006G178100 Sobic006G178100 Sobic005G108000--Sobic006G178100 Sobic002G171300 Sobic002G171300 Sobic005G108000--Sobic002G171300 Sobic009G211200 Sobic009G211200 Sobic005G108000--Sobic009G211200 Sobic005G108000--Sobic010G080550 Sobic006G002800 Sobic006G002800 Sobic005G108000--Sobic006G002800 Sobic005G108000--Sobic006G245900 Sobic004G031300--Sobic001G004100 Sobic004G031300--Sobic006G245900 Sobic006G191200 Sobic006G191200 Sobic004G031300--Sobic006G191200 Sobic005G000300 Sobic005G000300 Sobic004G031300--Sobic005G000300 Sobic006G125500 Sobic006G125500 Sobic004G031300--Sobic006G125500 Sobic002G296400 Sobic002G296400 Sobic004G031300--Sobic002G296400 Sobic004G031300--Sobic006G002800 Sobic003G308500 Sobic003G308500 Sobic004G031300--Sobic003G308500 Sobic002G381900 Sobic002G381900 Sobic004G031300--Sobic002G381900 Sobic005G133800 Sobic005G133800 Sobic006G166200--Sobic005G133800 Sobic004G053500 Sobic004G053500 Sobic006G166200--Sobic004G053500 Sobic008G124800 Sobic008G124800 Sobic006G166200--Sobic008G124800 Sobic003G405500 Sobic003G405500 Sobic006G166200--Sobic003G405500 Sobic006G224800 Sobic006G224800 Sobic006G166200--Sobic006G224800 Sobic001G145400 Sobic001G145400 Sobic006G166200--Sobic001G145400 Sobic010G059500 Sobic010G059500 Sobic006G166200--Sobic010G059500 Sobic006G166200--Sobic002G235200 Sobic009G201700 Sobic009G201700 Sobic006G166200--Sobic009G201700 Sobic006G086600 Sobic006G086600 Sobic002G235200--Sobic006G086600 Sobic001G089600 Sobic001G089600 Sobic002G235200--Sobic001G089600 Sobic002G235200--Sobic001G145400 Sobic002G235200--Sobic010G059500 Sobic003G146600 Sobic003G146600 Sobic002G235200--Sobic003G146600 Sobic002G235200--Sobic006G166200 Sobic003G036400 Sobic003G036400 Sobic002G235200--Sobic003G036400 Sobic004G320500 Sobic004G320500 Sobic002G235200--Sobic004G320500 Sobic002G235200--Sobic004G224600 Sobic009G098300 Sobic009G098300 Sobic010G080550--Sobic009G098300 Sobic010G080550--Sobic002G127200 Sobic001G014300 Sobic001G014300 Sobic010G080550--Sobic001G014300 Sobic010G080550--Sobic005G108000 Sobic004G149700 Sobic004G149700 Sobic010G080550--Sobic004G149700 Sobic006G216200 Sobic006G216200 Sobic010G080550--Sobic006G216200 Sobic004G223300 Sobic004G223300 Sobic010G080550--Sobic004G223300 Sobic001G245000 Sobic001G245000 Sobic010G080550--Sobic001G245000 Sobic006G154100 Sobic006G154100 Sobic010G080550--Sobic006G154100 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400 Sobic002G371600 Sobic002G371600 Sobic006G245900--Sobic002G371600 Sobic006G245900--Sobic002G296400 Sobic006G245900--Sobic004G031300 Sobic007G016900 Sobic007G016900 Sobic006G245900--Sobic007G016900 Sobic002G292800 Sobic002G292800 Sobic006G245900--Sobic002G292800 Sobic007G145400 Sobic007G145400 Sobic006G245900--Sobic007G145400 Sobic002G252100 Sobic002G252100 Sobic006G245900--Sobic002G252100 Sobic006G245900--Sobic003G308500 Sobic006G245900--Sobic001G346900 Sobic008G147200 Sobic008G147200 Sobic004G321700--Sobic008G147200 Sobic004G321700--Sobic001G393900 Sobic004G332400 Sobic004G332400 Sobic004G321700--Sobic004G332400 Sobic004G321700--Sobic001G346900 Sobic004G321700--Sobic006G002800 Sobic004G309900 Sobic004G309900 Sobic004G321700--Sobic004G309900 Sobic001G003500 Sobic001G003500 Sobic004G321700--Sobic001G003500 Sobic003G362900 Sobic003G362900 Sobic004G321700--Sobic003G362900 Sobic002G052700 Sobic002G052700 Sobic004G321700--Sobic002G052700
Octagon: transcription factors


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