Gene annotation
Transcriptome id Sobic.001G048600.1
Synonym Sb01g004450, ACD1-LIKE, PTC52, TIC55-IV
Functional annotation pheophorbide a oxygenase, chloroplast precursor, putative, expressed
UniProt A0A1B6QHD6
Pfam PF00355 PF08417
Panther DB PTHR21266 PTHR21266:SF25
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity GO:0010277chlorophyllide a oxygenase [overall] activity


Orthologs (automatic annotation)
TAIR AT4G25650 : ACD1-like
RAP-DB (Rice) LOC_Os03g59110.1 : pheophorbide a oxygenase, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a008645
Brachypodium KQK12598
Barley HORVU5Hr1G109470.18 , HORVU5Hr1G109470.19 , HORVU5Hr1G109470.10 , HORVU5Hr1G109470.12 , HORVU5Hr1G109470.13 , HORVU5Hr1G109470.14 , HORVU5Hr1G109470.15 , HORVU5Hr1G109470.16 , HORVU5Hr1G109470.17 , HORVU5Hr1G109470.11 , HORVU5Hr1G109470.8 , HORVU5Hr1G109470.9 , HORVU5Hr1G109470.2 , HORVU5Hr1G109470.3 , HORVU5Hr1G109470.1 , HORVU5Hr1G109470.6 , HORVU5Hr1G109470.7 , HORVU5Hr1G109470.4 , HORVU5Hr1G109470.5 , HORVU7Hr1G028370.9 , HORVU7Hr1G028370.8 , HORVU7Hr1G028370.1 , HORVU7Hr1G028370.3 , HORVU7Hr1G028370.2 , HORVU7Hr1G028370.5 , HORVU7Hr1G028370.4 , HORVU7Hr1G028370.7 , HORVU7Hr1G028370.6
Wheat TraesCS5D02G466600 , TraesCS5A02G456000 , TraesCS5A02G456000 , TraesCS7A02G137000 , TraesCS7A02G137000 , TraesCS7A02G137000 , TraesCS7D02G137200 , TraesCS7D02G137200 , TraesCS5B02G465000 , TraesCS5D02G466800 , TraesCS5D02G466800 , TraesCS5D02G466800 , TraesCS7B02G038100 , TraesCS5A02G455800 , TraesCS5A02G455800 , TraesCS5B02G464800 , TraesCS7B02G038300 , TraesCS7B02G038300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G371900 DC1 domain-containing protein, putative, expressed -
2 Sobic.003G392700 peptide transporter PTR2, putative, expressed K14638: SLC15A3_4, solute carrier family 15 (peptide/histidine transporter), member 3/4
3 Sobic.002G126000 kinesin-like protein, identical, putative, expressed -
4 Sobic.002G001800 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
5 Sobic.001G019300 WD40-like Beta Propeller Repeat family protein, expressed -
6 Sobic.005G190900 MBTB64 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
7 Sobic.002G281000 aquaporin protein, putative, expressed K09872: aquaporin PIP
8 Sobic.008G073400 B-box (BBX) protein(PubMedID : 30626335)@down-regulated TF in developmental senescence(PubMedID : 27586543)@B-box zinc finger family protein, putative, expressed -
9 Sobic.003G106500 expressed protein -
10 Sobic.004G063200 B-box (BBX) protein(PubMedID : 30626335)@CCT/B-box zinc finger protein, putative, expressed -
11 Sobic.005G097800 eukaryotic aspartyl protease domain containing protein, expressed -
12 Sobic.009G189000 expressed protein -
13 Sobic.001G198700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
14 Sobic.006G279400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
15 Sobic.001G173000 terpene synthase, putative, expressed -
16 Sobic.007G182900 helix-loop-helix DNA-binding domain containing protein, expressed -
17 Sobic.001G005500 plastid-specific 30S ribosomal protein 1, chloroplast precursor, putative, expressed -
18 Sobic.002G265400 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed K13691: pathogen-inducible salicylic acid glucosyltransferase
19 Sobic.001G324400 thymidine kinase, putative, expressed K00857: tdk, thymidine kinase
20 Sobic.003G108600 heat shock protein DnaJ, putative, expressed -


Gene co-expression network
sample Sobic001G048600 Sobic001G048600 Sobic002G371900 Sobic002G371900 Sobic001G048600--Sobic002G371900 Sobic003G392700 Sobic003G392700 Sobic001G048600--Sobic003G392700 Sobic002G126000 Sobic002G126000 Sobic001G048600--Sobic002G126000 Sobic002G001800 Sobic002G001800 Sobic001G048600--Sobic002G001800 Sobic001G019300 Sobic001G019300 Sobic001G048600--Sobic001G019300 Sobic005G190900 Sobic005G190900 Sobic001G048600--Sobic005G190900 Sobic002G281000 Sobic002G281000 Sobic001G048600--Sobic002G281000 Sobic008G073400 Sobic008G073400 Sobic001G048600--Sobic008G073400 Sobic003G106500 Sobic003G106500 Sobic001G048600--Sobic003G106500 Sobic002G371900--Sobic002G001800 Sobic002G371900--Sobic003G106500 Sobic001G198700 Sobic001G198700 Sobic002G371900--Sobic001G198700 Sobic002G371900--Sobic002G281000 Sobic002G265400 Sobic002G265400 Sobic002G371900--Sobic002G265400 Sobic004G063200 Sobic004G063200 Sobic002G371900--Sobic004G063200 Sobic002G371900--Sobic001G019300 Sobic002G371900--Sobic005G190900 Sobic003G135800 Sobic003G135800 Sobic002G371900--Sobic003G135800 Sobic001G242600 Sobic001G242600 Sobic003G392700--Sobic001G242600 Sobic005G097800 Sobic005G097800 Sobic003G392700--Sobic005G097800 Sobic009G189000 Sobic009G189000 Sobic003G392700--Sobic009G189000 Sobic001G404500 Sobic001G404500 Sobic003G392700--Sobic001G404500 Sobic006G123500 Sobic006G123500 Sobic003G392700--Sobic006G123500 Sobic004G268500 Sobic004G268500 Sobic003G392700--Sobic004G268500 Sobic006G055000 Sobic006G055000 Sobic003G392700--Sobic006G055000 Sobic003G392700--Sobic004G063200 Sobic003G392700--Sobic002G281000 Sobic001G145050 Sobic001G145050 Sobic002G126000--Sobic001G145050 Sobic002G126000--Sobic004G063200 Sobic002G126000--Sobic001G198700 Sobic002G126000--Sobic001G404500 Sobic003G402200 Sobic003G402200 Sobic002G126000--Sobic003G402200 Sobic002G041800 Sobic002G041800 Sobic002G126000--Sobic002G041800 Sobic002G366100 Sobic002G366100 Sobic002G126000--Sobic002G366100 Sobic002G126000--Sobic009G189000 Sobic006G060800 Sobic006G060800 Sobic002G126000--Sobic006G060800 Sobic002G001800--Sobic002G371900 Sobic002G001800--Sobic003G106500 Sobic002G001800--Sobic002G281000 Sobic004G096100 Sobic004G096100 Sobic002G001800--Sobic004G096100 Sobic001G377500 Sobic001G377500 Sobic002G001800--Sobic001G377500 Sobic008G063100 Sobic008G063100 Sobic002G001800--Sobic008G063100 Sobic002G001800--Sobic001G198700 Sobic002G001800--Sobic001G019300 Sobic002G001800--Sobic004G063200 Sobic001G019300--Sobic002G265400 Sobic001G019300--Sobic002G281000 Sobic005G063900 Sobic005G063900 Sobic001G019300--Sobic005G063900 Sobic001G321600 Sobic001G321600 Sobic001G019300--Sobic001G321600 Sobic001G005500 Sobic001G005500 Sobic001G019300--Sobic001G005500 Sobic001G019300--Sobic008G073400 Sobic002G195700 Sobic002G195700 Sobic001G019300--Sobic002G195700 Sobic001G019300--Sobic005G190900 Sobic001G019300--Sobic001G198700 Sobic005G190900--Sobic001G019300 Sobic001G291500 Sobic001G291500 Sobic005G190900--Sobic001G291500 Sobic005G190900--Sobic002G265400 Sobic001G432500 Sobic001G432500 Sobic005G190900--Sobic001G432500 Sobic005G190900--Sobic003G106500 Sobic005G190900--Sobic005G063900 Sobic005G190900--Sobic003G135800 Sobic010G225500 Sobic010G225500 Sobic005G190900--Sobic010G225500 Sobic005G190900--Sobic002G371900 Sobic001G525900 Sobic001G525900 Sobic002G281000--Sobic001G525900 Sobic002G281000--Sobic001G019300 Sobic002G281000--Sobic008G063100 Sobic009G202400 Sobic009G202400 Sobic002G281000--Sobic009G202400 Sobic002G281000--Sobic002G195700 Sobic002G281000--Sobic005G097800 Sobic002G281000--Sobic004G063200 Sobic002G281000--Sobic001G404500 Sobic005G021600 Sobic005G021600 Sobic002G281000--Sobic005G021600 Sobic008G073400--Sobic002G195700 Sobic008G073400--Sobic001G019300 Sobic008G073400--Sobic003G106500 Sobic008G073400--Sobic001G321600 Sobic008G073400--Sobic001G005500 Sobic008G073400--Sobic002G281000 Sobic008G073400--Sobic005G021600 Sobic008G073400--Sobic001G198700 Sobic005G089000 Sobic005G089000 Sobic008G073400--Sobic005G089000 Sobic003G106500--Sobic001G198700 Sobic003G106500--Sobic008G073400 Sobic003G106500--Sobic002G001800 Sobic003G106500--Sobic002G371900 Sobic003G106500--Sobic001G019300 Sobic003G106500--Sobic005G190900 Sobic003G106500--Sobic002G281000 Sobic005G192600 Sobic005G192600 Sobic003G106500--Sobic005G192600 Sobic003G106500--Sobic002G195700
Octagon: transcription factors


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