Gene annotation
Transcriptome id Sobic.001G056100.1
Synonym SbIAA1;SHY2, SHY2, Sb01g005110, auxin/indole-3-acetic acid (Aux/IAA), SbIAA1;auxin/indole-3-acetic acid (Aux/IAA), IAA3
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments" (PubMedID : 20499123)
"SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)" (PubMedID : 27586543)
Up-reguralion under drought (PubMedID : 24916767)
Decreased expression in phyB-1 mutant (PubMedID : 26893475)
OsIAA14 - Auxin-responsive Aux/IAA gene family member, expressed
UniProt C5WX63
Pfam PF02309
Panther DB PTHR31734 PTHR31734:SF14
NCBI CDD -
KEGG Orthology K14484; auxin-responsive protein IAA
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT1G04240 : AUX/IAA transcriptional regulator family protein
RAP-DB (Rice) LOC_Os07g08460.1 : OsIAA24 - Auxin-responsive Aux/IAA gene family member, expressed
MaizeGDB (Corn) Zm00025a004598 , Zm00025a025292 , Zm00025a008579 , Zm00025a007349 , Zm00025a016565 , Zm00025a045194
Brachypodium KQK12696 , KQK14080 , KQK20568
Barley HORVU5Hr1G106350.4 , HORVU5Hr1G106350.2 , HORVU5Hr1G106350.3 , HORVU5Hr1G106350.1 , HORVU5Hr1G093640.1 , HORVU5Hr1G093640.3 , HORVU5Hr1G014290.2 , HORVU5Hr1G014290.1
Wheat TraesCS5B02G446100 , TraesCS5D02G449400 , TraesCS5B02G058800 , TraesCS5B02G381800 , TraesCS5D02G388200 , TraesCS5D02G069200 , TraesCS5A02G058700 , TraesCS5A02G378200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G541601 - -
2 Sobic.003G270700 invertase/pectin methylesterase inhibitor family protein, putative, expressed -
3 Sobic.010G096500 expressed protein -
4 Sobic.007G184300 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@aspartic proteinase-like protein 2 precursor, putative, expressed -
5 Sobic.002G031800 PLA IIIA/PLP7, putative, expressed -
6 Sobic.006G077600 phosphatidylinositol N-acetylglucosaminyltransferase subunit P, putative, expressed K03861: PIGP, GPI19, phosphatidylinositol N-acetylglucosaminyltransferase subunit P
7 Sobic.006G278900 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@auxin response factor, putative, expressed -
8 Sobic.006G218100 expressed protein -
9 Sobic.005G076301 - -
10 Sobic.002G363700 expressed protein -
11 Sobic.001G487000 expressed protein -
12 Sobic.004G188201 - -
13 Sobic.005G160900 DUF593 domain containing protein, expressed -
14 Sobic.006G003300 adenylate kinase, putative, expressed K13800: CMPK1, UMP-CMP kinase
15 Sobic.010G128900 beta-galactosidase precursor, putative, expressed -
16 Sobic.006G264700 - -
17 Sobic.006G080700 CSLH1 - cellulose synthase-like family H, expressed -
18 Sobic.002G254600 expressed protein -
19 Sobic.002G241900 GPI-anchored protein, putative, expressed -
20 Sobic.010G196300 CESA3 - cellulose synthase, expressed K10999: cellulose synthase A


Gene co-expression network
sample Sobic001G056100 Sobic001G056100 Sobic001G541601 Sobic001G541601 Sobic001G056100--Sobic001G541601 Sobic003G270700 Sobic003G270700 Sobic001G056100--Sobic003G270700 Sobic010G096500 Sobic010G096500 Sobic001G056100--Sobic010G096500 Sobic007G184300 Sobic007G184300 Sobic001G056100--Sobic007G184300 Sobic002G031800 Sobic002G031800 Sobic001G056100--Sobic002G031800 Sobic006G077600 Sobic006G077600 Sobic001G056100--Sobic006G077600 Sobic006G278900 Sobic006G278900 Sobic001G056100--Sobic006G278900 Sobic006G218100 Sobic006G218100 Sobic001G056100--Sobic006G218100 Sobic005G076301 Sobic005G076301 Sobic001G056100--Sobic005G076301 Sobic006G264700 Sobic006G264700 Sobic001G541601--Sobic006G264700 Sobic001G541601--Sobic010G096500 Sobic001G229100 Sobic001G229100 Sobic001G541601--Sobic001G229100 Sobic001G541601--Sobic003G270700 Sobic010G196300 Sobic010G196300 Sobic001G541601--Sobic010G196300 Sobic008G139500 Sobic008G139500 Sobic001G541601--Sobic008G139500 Sobic001G487000 Sobic001G487000 Sobic001G541601--Sobic001G487000 Sobic004G323500 Sobic004G323500 Sobic001G541601--Sobic004G323500 Sobic004G025900 Sobic004G025900 Sobic001G541601--Sobic004G025900 Sobic003G270700--Sobic010G096500 Sobic003G270700--Sobic007G184300 Sobic002G241900 Sobic002G241900 Sobic003G270700--Sobic002G241900 Sobic007G213200 Sobic007G213200 Sobic003G270700--Sobic007G213200 Sobic003G270700--Sobic006G218100 Sobic003G270700--Sobic001G541601 Sobic005G160900 Sobic005G160900 Sobic003G270700--Sobic005G160900 Sobic006G115800 Sobic006G115800 Sobic003G270700--Sobic006G115800 Sobic003G270700--Sobic006G264700 Sobic010G096500--Sobic003G270700 Sobic010G096500--Sobic007G184300 Sobic010G096500--Sobic002G241900 Sobic010G096500--Sobic007G213200 Sobic010G096500--Sobic005G160900 Sobic010G096500--Sobic001G541601 Sobic010G096500--Sobic006G218100 Sobic010G096500--Sobic006G115800 Sobic010G096500--Sobic006G264700 Sobic007G184300--Sobic003G270700 Sobic007G184300--Sobic010G096500 Sobic007G184300--Sobic006G218100 Sobic007G184300--Sobic002G241900 Sobic007G184300--Sobic004G323500 Sobic007G184300--Sobic006G115800 Sobic007G184300--Sobic006G264700 Sobic007G184300--Sobic007G213200 Sobic007G184300--Sobic005G160900 Sobic002G031800--Sobic010G096500 Sobic002G031800--Sobic003G270700 Sobic002G031800--Sobic002G241900 Sobic004G149500 Sobic004G149500 Sobic002G031800--Sobic004G149500 Sobic002G158401 Sobic002G158401 Sobic002G031800--Sobic002G158401 Sobic002G031800--Sobic007G184300 Sobic001G359000 Sobic001G359000 Sobic002G031800--Sobic001G359000 Sobic002G031800--Sobic001G487000 Sobic002G030400 Sobic002G030400 Sobic002G031800--Sobic002G030400 Sobic002G313100 Sobic002G313100 Sobic006G077600--Sobic002G313100 Sobic001G072900 Sobic001G072900 Sobic006G077600--Sobic001G072900 Sobic006G077600--Sobic001G487000 Sobic006G077600--Sobic001G541601 Sobic006G077600--Sobic010G196300 Sobic004G076850 Sobic004G076850 Sobic006G077600--Sobic004G076850 Sobic003G293100 Sobic003G293100 Sobic006G077600--Sobic003G293100 Sobic008G166100 Sobic008G166100 Sobic006G077600--Sobic008G166100 Sobic009G201000 Sobic009G201000 Sobic006G077600--Sobic009G201000 Sobic006G278900--Sobic001G487000 Sobic002G363700 Sobic002G363700 Sobic006G278900--Sobic002G363700 Sobic006G278900--Sobic001G541601 Sobic005G076650 Sobic005G076650 Sobic006G278900--Sobic005G076650 Sobic006G278900--Sobic006G077600 Sobic008G098098 Sobic008G098098 Sobic006G278900--Sobic008G098098 Sobic002G256500 Sobic002G256500 Sobic006G278900--Sobic002G256500 Sobic007G208500 Sobic007G208500 Sobic006G278900--Sobic007G208500 Sobic006G278900--Sobic001G072900 Sobic006G218100--Sobic007G213200 Sobic006G218100--Sobic005G160900 Sobic006G218100--Sobic007G184300 Sobic006G218100--Sobic002G241900 Sobic006G218100--Sobic003G270700 Sobic006G218100--Sobic010G096500 Sobic005G138900 Sobic005G138900 Sobic006G218100--Sobic005G138900 Sobic010G266100 Sobic010G266100 Sobic006G218100--Sobic010G266100 Sobic001G536200 Sobic001G536200 Sobic006G218100--Sobic001G536200 Sobic004G043200 Sobic004G043200 Sobic005G076301--Sobic004G043200 Sobic007G016000 Sobic007G016000 Sobic005G076301--Sobic007G016000 Sobic005G076301--Sobic001G056100 Sobic010G128900 Sobic010G128900 Sobic005G076301--Sobic010G128900 Sobic004G109500 Sobic004G109500 Sobic005G076301--Sobic004G109500 Sobic005G076301--Sobic005G076650 Sobic004G180600 Sobic004G180600 Sobic005G076301--Sobic004G180600 Sobic001G262500 Sobic001G262500 Sobic005G076301--Sobic001G262500 Sobic001G092200 Sobic001G092200 Sobic005G076301--Sobic001G092200
Octagon: transcription factors


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