Gene annotation
Transcriptome id Sobic.001G072300.1
Synonym Sb01g006510
Functional annotation expressed protein
UniProt C5WZ47
Pfam PF12274
Panther DB PTHR34710 PTHR34710:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR -
RAP-DB (Rice) LOC_Os03g61840.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G072300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G076400 expressed protein -
2 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
3 Sobic.010G134000 pyrophosphate--fructose 6-phosphate 1-phosphotransferase subunit alpha, putative, expressed K00895: pfp, diphosphate-dependent phosphofructokinase
4 Sobic.003G092800 white-brown complex homolog protein 7, putative, expressed -
5 Sobic.002G098900 phospholipase D, putative, expressed K01115: phospholipase D1/2
6 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
7 Sobic.003G433400 OsDegp14 - Putative Deg protease homologue, expressed -
8 Sobic.001G095000 CorA-like magnesium transporter protein, putative, expressed K16075: MRS2, magnesium transporter
9 Sobic.006G250800 ABC1 family domain containing protein, putative, expressed K08869: ADCK, aarF domain-containing kinase
10 Sobic.003G010800 C4-dicarboxylate transporter/malic acid transport protein, expressed -
11 Sobic.002G310900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@GTPase activating protein, putative, expressed -
12 Sobic.002G084800 expressed protein -
13 Sobic.006G224100 expressed protein -
14 Sobic.006G270000 expressed protein -
15 Sobic.010G172900 histone deacetylase, putative, expressed K11418: histone deacetylase 11
16 Sobic.008G116700 expressed protein -
17 Sobic.003G291800 hexokinase, putative, expressed K00844: hexokinase
18 Sobic.006G115100 expressed protein -
19 Sobic.004G302800 MSP domain containing protein, expressed -
20 Sobic.003G403300 Sucrose phosphate synthase genes(PubMedID : 24456189)@"sucrose-phosphate synthase, predicted target of miR6223 or sbi-miR6223-3p expressed in the stems of sweet sorghum"(PubMedID : 26117170)@sucrose phosphate synthase(PubMedID : 26616172)@Sugar synthesis(PubMedID : 27330561)@sucrose-phosphate synthase, putative, expressed K00696: sucrose-phosphate synthase


Gene co-expression network
sample Sobic001G072300 Sobic001G072300 Sobic007G076400 Sobic007G076400 Sobic001G072300--Sobic007G076400 Sobic007G087000 Sobic007G087000 Sobic001G072300--Sobic007G087000 Sobic010G134000 Sobic010G134000 Sobic001G072300--Sobic010G134000 Sobic003G092800 Sobic003G092800 Sobic001G072300--Sobic003G092800 Sobic002G098900 Sobic002G098900 Sobic001G072300--Sobic002G098900 Sobic009G107300 Sobic009G107300 Sobic001G072300--Sobic009G107300 Sobic003G433400 Sobic003G433400 Sobic001G072300--Sobic003G433400 Sobic001G095000 Sobic001G095000 Sobic001G072300--Sobic001G095000 Sobic006G250800 Sobic006G250800 Sobic001G072300--Sobic006G250800 Sobic002G084800 Sobic002G084800 Sobic007G076400--Sobic002G084800 Sobic002G200000 Sobic002G200000 Sobic007G076400--Sobic002G200000 Sobic007G076400--Sobic007G087000 Sobic002G079000 Sobic002G079000 Sobic007G076400--Sobic002G079000 Sobic008G116700 Sobic008G116700 Sobic007G076400--Sobic008G116700 Sobic007G076400--Sobic006G250800 Sobic006G060000 Sobic006G060000 Sobic007G076400--Sobic006G060000 Sobic001G188400 Sobic001G188400 Sobic007G076400--Sobic001G188400 Sobic006G115100 Sobic006G115100 Sobic007G076400--Sobic006G115100 Sobic007G087000--Sobic002G079000 Sobic007G087000--Sobic007G076400 Sobic002G306100 Sobic002G306100 Sobic007G087000--Sobic002G306100 Sobic007G087000--Sobic008G116700 Sobic007G087000--Sobic006G250800 Sobic001G014200 Sobic001G014200 Sobic007G087000--Sobic001G014200 Sobic001G237600 Sobic001G237600 Sobic007G087000--Sobic001G237600 Sobic007G172700 Sobic007G172700 Sobic007G087000--Sobic007G172700 Sobic007G087000--Sobic009G107300 Sobic003G010800 Sobic003G010800 Sobic010G134000--Sobic003G010800 Sobic010G134000--Sobic003G433400 Sobic003G403300 Sobic003G403300 Sobic010G134000--Sobic003G403300 Sobic002G310900 Sobic002G310900 Sobic010G134000--Sobic002G310900 Sobic002G407000 Sobic002G407000 Sobic010G134000--Sobic002G407000 Sobic001G411200 Sobic001G411200 Sobic010G134000--Sobic001G411200 Sobic003G291800 Sobic003G291800 Sobic010G134000--Sobic003G291800 Sobic001G178100 Sobic001G178100 Sobic010G134000--Sobic001G178100 Sobic006G270000 Sobic006G270000 Sobic010G134000--Sobic006G270000 Sobic009G217400 Sobic009G217400 Sobic003G092800--Sobic009G217400 Sobic003G092800--Sobic003G433400 Sobic003G092800--Sobic002G084800 Sobic008G069300 Sobic008G069300 Sobic003G092800--Sobic008G069300 Sobic007G022600 Sobic007G022600 Sobic003G092800--Sobic007G022600 Sobic003G092800--Sobic003G291800 Sobic009G026300 Sobic009G026300 Sobic003G092800--Sobic009G026300 Sobic003G092800--Sobic007G076400 Sobic003G092800--Sobic006G250800 Sobic002G098900--Sobic003G403300 Sobic002G098900--Sobic002G407000 Sobic001G067700 Sobic001G067700 Sobic002G098900--Sobic001G067700 Sobic001G198400 Sobic001G198400 Sobic002G098900--Sobic001G198400 Sobic002G376600 Sobic002G376600 Sobic002G098900--Sobic002G376600 Sobic002G098900--Sobic003G092800 Sobic002G098900--Sobic008G069300 Sobic003G198900 Sobic003G198900 Sobic002G098900--Sobic003G198900 Sobic003G134300 Sobic003G134300 Sobic002G098900--Sobic003G134300 Sobic009G228000 Sobic009G228000 Sobic009G107300--Sobic009G228000 Sobic009G107300--Sobic007G087000 Sobic004G240400 Sobic004G240400 Sobic009G107300--Sobic004G240400 Sobic009G107300--Sobic008G116700 Sobic003G043000 Sobic003G043000 Sobic009G107300--Sobic003G043000 Sobic004G198600 Sobic004G198600 Sobic009G107300--Sobic004G198600 Sobic003G120300 Sobic003G120300 Sobic009G107300--Sobic003G120300 Sobic003G181700 Sobic003G181700 Sobic009G107300--Sobic003G181700 Sobic001G156900 Sobic001G156900 Sobic009G107300--Sobic001G156900 Sobic003G433400--Sobic006G270000 Sobic003G433400--Sobic009G217400 Sobic003G433400--Sobic003G010800 Sobic003G433400--Sobic003G291800 Sobic005G048500 Sobic005G048500 Sobic003G433400--Sobic005G048500 Sobic003G235100 Sobic003G235100 Sobic003G433400--Sobic003G235100 Sobic003G433400--Sobic003G092800 Sobic002G069000 Sobic002G069000 Sobic003G433400--Sobic002G069000 Sobic003G433400--Sobic002G084800 Sobic003G202600 Sobic003G202600 Sobic001G095000--Sobic003G202600 Sobic001G095000--Sobic007G087000 Sobic001G095000--Sobic001G237600 Sobic001G095000--Sobic002G079000 Sobic007G032000 Sobic007G032000 Sobic001G095000--Sobic007G032000 Sobic003G302200 Sobic003G302200 Sobic001G095000--Sobic003G302200 Sobic001G095000--Sobic007G076400 Sobic001G095000--Sobic001G188400 Sobic001G095000--Sobic008G116700 Sobic006G250800--Sobic002G079000 Sobic006G250800--Sobic001G188400 Sobic006G250800--Sobic009G217400 Sobic003G316200 Sobic003G316200 Sobic006G250800--Sobic003G316200 Sobic006G250800--Sobic002G084800 Sobic009G116900 Sobic009G116900 Sobic006G250800--Sobic009G116900 Sobic006G250800--Sobic007G087000 Sobic001G253300 Sobic001G253300 Sobic006G250800--Sobic001G253300 Sobic006G250800--Sobic002G306100
Octagon: transcription factors


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