Gene annotation
Transcriptome id Sobic.001G090200.3,Sobic.001G090200.1,Sobic.001G090200.2
Synonym NDF5, Sb01g008140
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
aldose 1-epimerase, putative, expressed
UniProt A0A1Z5S504 , A0A1Z5S4X3 , C5X144
Pfam -
Panther DB PTHR11122 PTHR11122:SF15
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55370 : NDH-dependent cyclic electron flow 5
RAP-DB (Rice) LOC_Os03g53710.1 : aldose 1-epimerase, putative, expressed
MaizeGDB (Corn) Zm00025a008140
Brachypodium KQK13222
Barley HORVU5Hr1G094890.8 , HORVU5Hr1G094890.3 , HORVU5Hr1G094890.2 , HORVU5Hr1G094890.5 , HORVU5Hr1G094890.4 , HORVU5Hr1G094890.6
Wheat TraesCS5A02G386900 , TraesCS5D02G396700
Populus -


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cDNA sequences
Sobic.001G090200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G121200 high affinity nitrate transporter, putative, expressed -
2 Sobic.006G232300 cytochrome P450 72A1, putative, expressed -
3 Sobic.007G213500 expressed protein -
4 Sobic.001G527900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@nascent polypeptide-associated complex subunit alpha, putative, expressed K03626: EGD2, nascent polypeptide-associated complex subunit alpha
5 Sobic.001G033200 GRAS family transcription factor domain containing protein, expressed -
6 Sobic.002G320700 expressed protein -
7 Sobic.004G026000 ankyrin repeat domain-containing protein, chloroplast precursor, putative, expressed -
8 Sobic.002G314950 - -
9 Sobic.003G106100 expressed protein -
10 Sobic.004G314100 GS9(Ortholog in rice:Zhao et al.(2018))(PubMedID : 31659890)@expressed protein -
11 Sobic.001G483200 ataxin-2 C-terminal region family protein, expressed -
12 Sobic.006G093400 potassium channel SKOR, putative, expressed -
13 Sobic.001G361750 - -
14 Sobic.004G231501 - -
15 Sobic.009G235100 GTP-binding protein, putative, expressed K03595: era, GTPase
16 Sobic.007G061500 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
17 Sobic.005G155001 - -
18 Sobic.002G123700 - -
19 Sobic.004G203600 Regulator of chromosome condensation domain containing protein, expressed -
20 Sobic.001G468200 MT-A70 domain containing protein, expressed -


Gene co-expression network
sample Sobic001G090200 Sobic001G090200 Sobic006G121200 Sobic006G121200 Sobic001G090200--Sobic006G121200 Sobic006G232300 Sobic006G232300 Sobic001G090200--Sobic006G232300 Sobic007G213500 Sobic007G213500 Sobic001G090200--Sobic007G213500 Sobic001G527900 Sobic001G527900 Sobic001G090200--Sobic001G527900 Sobic001G033200 Sobic001G033200 Sobic001G090200--Sobic001G033200 Sobic002G320700 Sobic002G320700 Sobic001G090200--Sobic002G320700 Sobic004G026000 Sobic004G026000 Sobic001G090200--Sobic004G026000 Sobic002G314950 Sobic002G314950 Sobic001G090200--Sobic002G314950 Sobic003G106100 Sobic003G106100 Sobic001G090200--Sobic003G106100 Sobic006G121200--Sobic007G213500 Sobic006G121200--Sobic004G026000 Sobic004G314100 Sobic004G314100 Sobic006G121200--Sobic004G314100 Sobic004G310400 Sobic004G310400 Sobic006G121200--Sobic004G310400 Sobic001G468200 Sobic001G468200 Sobic006G121200--Sobic001G468200 Sobic001G071700 Sobic001G071700 Sobic006G121200--Sobic001G071700 Sobic009G235100 Sobic009G235100 Sobic006G121200--Sobic009G235100 Sobic002G123700 Sobic002G123700 Sobic006G121200--Sobic002G123700 Sobic007G061500 Sobic007G061500 Sobic006G121200--Sobic007G061500 Sobic006G093400 Sobic006G093400 Sobic006G232300--Sobic006G093400 Sobic009G004300 Sobic009G004300 Sobic006G232300--Sobic009G004300 Sobic006G232300--Sobic002G314950 Sobic010G257300 Sobic010G257300 Sobic006G232300--Sobic010G257300 Sobic001G483200 Sobic001G483200 Sobic006G232300--Sobic001G483200 Sobic004G012100 Sobic004G012100 Sobic006G232300--Sobic004G012100 Sobic003G155350 Sobic003G155350 Sobic006G232300--Sobic003G155350 Sobic010G253700 Sobic010G253700 Sobic006G232300--Sobic010G253700 Sobic006G232300--Sobic001G468200 Sobic007G213500--Sobic004G026000 Sobic007G213500--Sobic006G121200 Sobic007G213500--Sobic004G314100 Sobic007G017300 Sobic007G017300 Sobic007G213500--Sobic007G017300 Sobic007G213500--Sobic001G483200 Sobic001G368000 Sobic001G368000 Sobic007G213500--Sobic001G368000 Sobic007G213500--Sobic003G106100 Sobic007G213500--Sobic007G061500 Sobic001G104100 Sobic001G104100 Sobic007G213500--Sobic001G104100 Sobic005G155001 Sobic005G155001 Sobic001G527900--Sobic005G155001 Sobic001G527900--Sobic001G483200 Sobic009G114900 Sobic009G114900 Sobic001G527900--Sobic009G114900 Sobic001G527900--Sobic002G314950 Sobic009G004500 Sobic009G004500 Sobic001G527900--Sobic009G004500 Sobic010G021401 Sobic010G021401 Sobic001G527900--Sobic010G021401 Sobic001G060200 Sobic001G060200 Sobic001G527900--Sobic001G060200 Sobic001G527900--Sobic007G017300 Sobic007G090406 Sobic007G090406 Sobic001G527900--Sobic007G090406 Sobic001G033200--Sobic002G320700 Sobic001G361750 Sobic001G361750 Sobic001G033200--Sobic001G361750 Sobic001G033200--Sobic001G071700 Sobic004G231501 Sobic004G231501 Sobic001G033200--Sobic004G231501 Sobic001G033200--Sobic001G483200 Sobic001G028500 Sobic001G028500 Sobic001G033200--Sobic001G028500 Sobic001G033200--Sobic007G061500 Sobic001G456650 Sobic001G456650 Sobic001G033200--Sobic001G456650 Sobic004G202750 Sobic004G202750 Sobic001G033200--Sobic004G202750 Sobic002G320700--Sobic004G202750 Sobic006G170800 Sobic006G170800 Sobic002G320700--Sobic006G170800 Sobic002G320700--Sobic001G033200 Sobic002G320700--Sobic001G104100 Sobic001G350300 Sobic001G350300 Sobic002G320700--Sobic001G350300 Sobic002G320700--Sobic001G028500 Sobic004G350600 Sobic004G350600 Sobic002G320700--Sobic004G350600 Sobic002G320700--Sobic001G071700 Sobic002G399000 Sobic002G399000 Sobic002G320700--Sobic002G399000 Sobic004G026000--Sobic004G310400 Sobic004G026000--Sobic007G213500 Sobic004G026000--Sobic004G314100 Sobic004G026000--Sobic001G104100 Sobic001G096200 Sobic001G096200 Sobic004G026000--Sobic001G096200 Sobic004G026000--Sobic006G121200 Sobic004G026000--Sobic003G106100 Sobic004G026000--Sobic004G231501 Sobic004G026000--Sobic001G028500 Sobic002G314950--Sobic001G527900 Sobic002G314950--Sobic006G232300 Sobic002G314950--Sobic005G155001 Sobic002G314950--Sobic010G253700 Sobic002G314950--Sobic001G483200 Sobic002G314950--Sobic006G093400 Sobic002G314950--Sobic009G114900 Sobic002G314950--Sobic009G004300 Sobic007G200200 Sobic007G200200 Sobic002G314950--Sobic007G200200 Sobic003G106100--Sobic004G314100 Sobic003G106100--Sobic001G028500 Sobic003G106100--Sobic004G231501 Sobic003G106100--Sobic007G061500 Sobic003G106100--Sobic001G104100 Sobic003G106100--Sobic007G213500 Sobic009G199900 Sobic009G199900 Sobic003G106100--Sobic009G199900 Sobic003G106100--Sobic001G060200 Sobic003G106100--Sobic004G026000
Octagon: transcription factors


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