Gene annotation
Transcriptome id Sobic.001G099200.1
Synonym Sb01g008870
Functional annotation expressed protein
UniProt C5X1C9
Pfam PF13041
Panther DB PTHR24015 PTHR24015:SF320
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G77405 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os03g52620.1 : expressed protein
MaizeGDB (Corn) Zm00025a008041
Brachypodium -
Barley HORVU3Hr1G106920.1 , HORVU6Hr1G060420.2 , HORVU6Hr1G060420.3 , HORVU6Hr1G060420.4 , HORVU6Hr1G060420.5 , HORVU6Hr1G060420.6 , HORVU6Hr1G060420.7 , HORVU6Hr1G060420.8 , HORVU6Hr1G060420.9 , HORVU6Hr1G060420.12 , HORVU6Hr1G060420.10 , HORVU6Hr1G060420.11 , HORVU7Hr1G108810.9 , HORVU7Hr1G108810.8 , HORVU7Hr1G108810.4 , HORVU7Hr1G108810.1 , HORVU4Hr1G037850.1 , HORVU4Hr1G011170.5 , HORVU4Hr1G011170.1 , HORVU4Hr1G011170.2 , HORVU4Hr1G011170.3 , HORVU2Hr1G027220.1 , HORVU2Hr1G063650.2 , HORVU2Hr1G063650.1 , HORVU3Hr1G081820.1 , HORVU3Hr1G081820.2 , HORVU3Hr1G081820.3 , HORVU3Hr1G106830.1 , HORVU3Hr1G106830.2
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G365400 PPR repeat domain containing protein, putative, expressed -
2 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
3 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
4 Sobic.010G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
5 Sobic.009G238700 EMB2744, putative, expressed -
6 Sobic.008G163400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
7 Sobic.001G081300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
8 Sobic.004G305100 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
9 Sobic.001G391101 - -
10 Sobic.010G232700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
11 Sobic.006G054000 - -
12 Sobic.006G273900 expressed protein -
13 Sobic.008G149200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
14 Sobic.008G066900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
15 Sobic.004G226900 expressed protein -
16 Sobic.001G149100 vegetative storage protein, putative, expressed -
17 Sobic.002G251800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
18 Sobic.001G144600 parafibromin, putative, expressed K15175: parafibromin
19 Sobic.006G231400 pentatricopeptide repeat domain containing protein, putative, expressed -
20 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G099200 Sobic001G099200 Sobic002G365400 Sobic002G365400 Sobic001G099200--Sobic002G365400 Sobic003G051500 Sobic003G051500 Sobic001G099200--Sobic003G051500 Sobic009G155400 Sobic009G155400 Sobic001G099200--Sobic009G155400 Sobic010G066900 Sobic010G066900 Sobic001G099200--Sobic010G066900 Sobic009G238700 Sobic009G238700 Sobic001G099200--Sobic009G238700 Sobic008G163400 Sobic008G163400 Sobic001G099200--Sobic008G163400 Sobic001G081300 Sobic001G081300 Sobic001G099200--Sobic001G081300 Sobic004G305100 Sobic004G305100 Sobic001G099200--Sobic004G305100 Sobic001G391101 Sobic001G391101 Sobic001G099200--Sobic001G391101 Sobic004G016300 Sobic004G016300 Sobic002G365400--Sobic004G016300 Sobic003G098200 Sobic003G098200 Sobic002G365400--Sobic003G098200 Sobic002G365400--Sobic003G051500 Sobic002G365400--Sobic001G099200 Sobic006G225800 Sobic006G225800 Sobic002G365400--Sobic006G225800 Sobic010G004400 Sobic010G004400 Sobic002G365400--Sobic010G004400 Sobic001G395300 Sobic001G395300 Sobic002G365400--Sobic001G395300 Sobic010G099300 Sobic010G099300 Sobic002G365400--Sobic010G099300 Sobic001G392100 Sobic001G392100 Sobic002G365400--Sobic001G392100 Sobic003G051500--Sobic001G391101 Sobic001G001200 Sobic001G001200 Sobic003G051500--Sobic001G001200 Sobic005G028300 Sobic005G028300 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic003G051500--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic009G116400 Sobic009G116400 Sobic009G155400--Sobic009G116400 Sobic009G155400--Sobic008G163400 Sobic004G241000 Sobic004G241000 Sobic009G155400--Sobic004G241000 Sobic006G085900 Sobic006G085900 Sobic009G155400--Sobic006G085900 Sobic009G155400--Sobic004G217900 Sobic006G069100 Sobic006G069100 Sobic009G155400--Sobic006G069100 Sobic002G172500 Sobic002G172500 Sobic009G155400--Sobic002G172500 Sobic006G262700 Sobic006G262700 Sobic009G155400--Sobic006G262700 Sobic005G210700 Sobic005G210700 Sobic009G155400--Sobic005G210700 Sobic001G149100 Sobic001G149100 Sobic010G066900--Sobic001G149100 Sobic004G176500 Sobic004G176500 Sobic010G066900--Sobic004G176500 Sobic010G066900--Sobic009G238700 Sobic010G066900--Sobic008G163400 Sobic010G066900--Sobic004G241000 Sobic003G299200 Sobic003G299200 Sobic010G066900--Sobic003G299200 Sobic003G239000 Sobic003G239000 Sobic010G066900--Sobic003G239000 Sobic001G347100 Sobic001G347100 Sobic010G066900--Sobic001G347100 Sobic007G123100 Sobic007G123100 Sobic010G066900--Sobic007G123100 Sobic007G060600 Sobic007G060600 Sobic009G238700--Sobic007G060600 Sobic009G238700--Sobic001G081300 Sobic009G238700--Sobic001G347100 Sobic009G238700--Sobic001G040600 Sobic001G049800 Sobic001G049800 Sobic009G238700--Sobic001G049800 Sobic007G179600 Sobic007G179600 Sobic009G238700--Sobic007G179600 Sobic006G271900 Sobic006G271900 Sobic009G238700--Sobic006G271900 Sobic009G238700--Sobic003G299200 Sobic003G352100 Sobic003G352100 Sobic009G238700--Sobic003G352100 Sobic008G163400--Sobic003G239000 Sobic008G163400--Sobic004G241000 Sobic008G163400--Sobic009G155400 Sobic008G163400--Sobic009G116400 Sobic004G256900 Sobic004G256900 Sobic008G163400--Sobic004G256900 Sobic006G262800 Sobic006G262800 Sobic008G163400--Sobic006G262800 Sobic001G122200 Sobic001G122200 Sobic008G163400--Sobic001G122200 Sobic002G267600 Sobic002G267600 Sobic008G163400--Sobic002G267600 Sobic008G163400--Sobic001G149100 Sobic001G081300--Sobic001G391101 Sobic001G081300--Sobic007G179600 Sobic001G081300--Sobic001G347100 Sobic001G081300--Sobic009G238700 Sobic001G081300--Sobic003G051500 Sobic001G081300--Sobic003G419800 Sobic001G081300--Sobic007G060600 Sobic001G081300--Sobic001G049800 Sobic001G081300--Sobic010G099300 Sobic003G098900 Sobic003G098900 Sobic004G305100--Sobic003G098900 Sobic010G041000 Sobic010G041000 Sobic004G305100--Sobic010G041000 Sobic001G502600 Sobic001G502600 Sobic004G305100--Sobic001G502600 Sobic006G125900 Sobic006G125900 Sobic004G305100--Sobic006G125900 Sobic006G231400 Sobic006G231400 Sobic004G305100--Sobic006G231400 Sobic002G318800 Sobic002G318800 Sobic004G305100--Sobic002G318800 Sobic010G215900 Sobic010G215900 Sobic004G305100--Sobic010G215900 Sobic009G163600 Sobic009G163600 Sobic004G305100--Sobic009G163600 Sobic006G140400 Sobic006G140400 Sobic004G305100--Sobic006G140400 Sobic001G391101--Sobic001G081300 Sobic001G391101--Sobic001G347100 Sobic001G391101--Sobic003G051500 Sobic001G391101--Sobic005G028300 Sobic001G391101--Sobic007G179600 Sobic001G391101--Sobic003G419800 Sobic003G014700 Sobic003G014700 Sobic001G391101--Sobic003G014700 Sobic001G391101--Sobic001G001200 Sobic001G391101--Sobic004G241000
Octagon: transcription factors


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