Gene annotation
Transcriptome id Sobic.002G365400.1
Synonym Sb02g038430
Functional annotation PPR repeat domain containing protein, putative, expressed
UniProt Q09EJ5 , C5XD97
Pfam PF13812 PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF584
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G26500 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os07g40820.1 : PPR repeat domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048667
Brachypodium KQK15394
Barley HORVU2Hr1G033940.4 , HORVU2Hr1G033940.3 , HORVU2Hr1G033940.2 , HORVU2Hr1G033940.1
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G016300 PPR repeat containing protein, expressed -
2 Sobic.003G098200 expressed protein -
3 Sobic.003G051500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
4 Sobic.001G099200 expressed protein -
5 Sobic.006G225800 OsFBO11 - F-box and other domain containing protein, expressed -
6 Sobic.010G004400 septum site-determining protein minD, putative, expressed K03609: septum site-determining protein MinD
7 Sobic.001G395300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsClp4 - Putative Clp protease homologue, expressed K01358: clpP, ATP-dependent Clp protease, protease subunit
8 Sobic.010G099300 - K03501: gidB, 16S rRNA (guanine527-N7)-methyltransferase
9 Sobic.001G392100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
10 Sobic.001G099800 nucleic acid binding protein, putative, expressed -
11 Sobic.001G097400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphatidylinositol kinase, putative, expressed -
12 Sobic.001G391101 - -
13 Sobic.004G206300 pre-mRNA-splicing factor ISY1, putative, expressed K12870: pre-mRNA-splicing factor ISY1
14 Sobic.006G273900 expressed protein -
15 Sobic.001G389500 guanylate kinase, putative, expressed K00942: E2.7.4.8, guanylate kinase
16 Sobic.004G192300 - -
17 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
18 Sobic.004G118800 receptor lectin kinase like protein, putative, expressed -
19 Sobic.003G098900 - -
20 Sobic.003G136400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidyl-prolyl cis-trans isomerase, putative, expressed K03768: PPIB, peptidyl-prolyl cis-trans isomerase B (cyclophilin B)


Gene co-expression network
sample Sobic002G365400 Sobic002G365400 Sobic004G016300 Sobic004G016300 Sobic002G365400--Sobic004G016300 Sobic003G098200 Sobic003G098200 Sobic002G365400--Sobic003G098200 Sobic003G051500 Sobic003G051500 Sobic002G365400--Sobic003G051500 Sobic001G099200 Sobic001G099200 Sobic002G365400--Sobic001G099200 Sobic006G225800 Sobic006G225800 Sobic002G365400--Sobic006G225800 Sobic010G004400 Sobic010G004400 Sobic002G365400--Sobic010G004400 Sobic001G395300 Sobic001G395300 Sobic002G365400--Sobic001G395300 Sobic010G099300 Sobic010G099300 Sobic002G365400--Sobic010G099300 Sobic001G392100 Sobic001G392100 Sobic002G365400--Sobic001G392100 Sobic004G016300--Sobic002G365400 Sobic004G117800 Sobic004G117800 Sobic004G016300--Sobic004G117800 Sobic001G537001 Sobic001G537001 Sobic004G016300--Sobic001G537001 Sobic004G118800 Sobic004G118800 Sobic004G016300--Sobic004G118800 Sobic007G197400 Sobic007G197400 Sobic004G016300--Sobic007G197400 Sobic001G099800 Sobic001G099800 Sobic004G016300--Sobic001G099800 Sobic004G206300 Sobic004G206300 Sobic004G016300--Sobic004G206300 Sobic001G280400 Sobic001G280400 Sobic004G016300--Sobic001G280400 Sobic010G059200 Sobic010G059200 Sobic004G016300--Sobic010G059200 Sobic006G127500 Sobic006G127500 Sobic003G098200--Sobic006G127500 Sobic001G097400 Sobic001G097400 Sobic003G098200--Sobic001G097400 Sobic003G257200 Sobic003G257200 Sobic003G098200--Sobic003G257200 Sobic003G436600 Sobic003G436600 Sobic003G098200--Sobic003G436600 Sobic001G436300 Sobic001G436300 Sobic003G098200--Sobic001G436300 Sobic009G233700 Sobic009G233700 Sobic003G098200--Sobic009G233700 Sobic001G235700 Sobic001G235700 Sobic003G098200--Sobic001G235700 Sobic003G425100 Sobic003G425100 Sobic003G098200--Sobic003G425100 Sobic004G227100 Sobic004G227100 Sobic003G098200--Sobic004G227100 Sobic001G391101 Sobic001G391101 Sobic003G051500--Sobic001G391101 Sobic001G001200 Sobic001G001200 Sobic003G051500--Sobic001G001200 Sobic005G028300 Sobic005G028300 Sobic003G051500--Sobic005G028300 Sobic001G040600 Sobic001G040600 Sobic003G051500--Sobic001G040600 Sobic001G081300 Sobic001G081300 Sobic003G051500--Sobic001G081300 Sobic003G419800 Sobic003G419800 Sobic003G051500--Sobic003G419800 Sobic007G182600 Sobic007G182600 Sobic003G051500--Sobic007G182600 Sobic003G051500--Sobic010G099300 Sobic004G217900 Sobic004G217900 Sobic003G051500--Sobic004G217900 Sobic001G099200--Sobic002G365400 Sobic001G099200--Sobic003G051500 Sobic009G155400 Sobic009G155400 Sobic001G099200--Sobic009G155400 Sobic010G066900 Sobic010G066900 Sobic001G099200--Sobic010G066900 Sobic009G238700 Sobic009G238700 Sobic001G099200--Sobic009G238700 Sobic008G163400 Sobic008G163400 Sobic001G099200--Sobic008G163400 Sobic001G099200--Sobic001G081300 Sobic004G305100 Sobic004G305100 Sobic001G099200--Sobic004G305100 Sobic001G099200--Sobic001G391101 Sobic006G251600 Sobic006G251600 Sobic006G225800--Sobic006G251600 Sobic006G225800--Sobic004G305100 Sobic004G287100 Sobic004G287100 Sobic006G225800--Sobic004G287100 Sobic002G262100 Sobic002G262100 Sobic006G225800--Sobic002G262100 Sobic006G225800--Sobic002G365400 Sobic003G098900 Sobic003G098900 Sobic006G225800--Sobic003G098900 Sobic010G041000 Sobic010G041000 Sobic006G225800--Sobic010G041000 Sobic002G146900 Sobic002G146900 Sobic006G225800--Sobic002G146900 Sobic004G173100 Sobic004G173100 Sobic006G225800--Sobic004G173100 Sobic004G227500 Sobic004G227500 Sobic010G004400--Sobic004G227500 Sobic010G277200 Sobic010G277200 Sobic010G004400--Sobic010G277200 Sobic007G000400 Sobic007G000400 Sobic010G004400--Sobic007G000400 Sobic007G219200 Sobic007G219200 Sobic010G004400--Sobic007G219200 Sobic010G004400--Sobic004G217900 Sobic010G004400--Sobic003G051500 Sobic001G187800 Sobic001G187800 Sobic010G004400--Sobic001G187800 Sobic001G261585 Sobic001G261585 Sobic010G004400--Sobic001G261585 Sobic010G004400--Sobic009G155400 Sobic009G137000 Sobic009G137000 Sobic001G395300--Sobic009G137000 Sobic002G404900 Sobic002G404900 Sobic001G395300--Sobic002G404900 Sobic001G228300 Sobic001G228300 Sobic001G395300--Sobic001G228300 Sobic006G237100 Sobic006G237100 Sobic001G395300--Sobic006G237100 Sobic006G263800 Sobic006G263800 Sobic001G395300--Sobic006G263800 Sobic002G140000 Sobic002G140000 Sobic001G395300--Sobic002G140000 Sobic006G204100 Sobic006G204100 Sobic001G395300--Sobic006G204100 Sobic007G116100 Sobic007G116100 Sobic001G395300--Sobic007G116100 Sobic010G027200 Sobic010G027200 Sobic001G395300--Sobic010G027200 Sobic010G099300--Sobic001G040600 Sobic010G099300--Sobic007G182600 Sobic007G060600 Sobic007G060600 Sobic010G099300--Sobic007G060600 Sobic010G099300--Sobic001G081300 Sobic001G437801 Sobic001G437801 Sobic010G099300--Sobic001G437801 Sobic001G049800 Sobic001G049800 Sobic010G099300--Sobic001G049800 Sobic010G099300--Sobic003G051500 Sobic010G099300--Sobic001G395300 Sobic006G271900 Sobic006G271900 Sobic010G099300--Sobic006G271900 Sobic003G128000 Sobic003G128000 Sobic001G392100--Sobic003G128000 Sobic003G239000 Sobic003G239000 Sobic001G392100--Sobic003G239000 Sobic003G322200 Sobic003G322200 Sobic001G392100--Sobic003G322200 Sobic008G083400 Sobic008G083400 Sobic001G392100--Sobic008G083400 Sobic002G267600 Sobic002G267600 Sobic001G392100--Sobic002G267600 Sobic001G392100--Sobic001G391101 Sobic001G149100 Sobic001G149100 Sobic001G392100--Sobic001G149100 Sobic009G253400 Sobic009G253400 Sobic001G392100--Sobic009G253400 Sobic008G066900 Sobic008G066900 Sobic001G392100--Sobic008G066900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.