Gene annotation
Transcriptome id Sobic.006G225800.1
Synonym Sb06g029473
Functional annotation OsFBO11 - F-box and other domain containing protein, expressed
UniProt A0A1B6PNC6
Pfam PF00646 PF08387
Panther DB PTHR32212 PTHR32212:SF76
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G16930 : F-box/RNI-like/FBD-like domains-containing protein
RAP-DB (Rice) LOC_Os02g29150.2 : OsFBO11 - F-box and other domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium KQK08597 , KQK15162 , KQK08602 , KQK21695 , PNT72329 , PNT72328
Barley HORVU3Hr1G094100.1 , HORVU3Hr1G094100.3
Wheat TraesCS4B02G115300 , TraesCS2A02G555900 , TraesCS2B02G088600 , TraesCS4D02G117600 , TraesCS5B02G480000 , TraesCS2B02G548500 , TraesCS2A02G096100 , TraesCS3B02G501600 , TraesCS2B02G111500 , TraesCS2D02G558100 , TraesCS2D02G558100 , TraesCS3B02G501400 , TraesCS5D02G480700 , TraesCS3B02G502700 , TraesCS6B02G137400 , TraesCS4D02G059800 , TraesCS3D02G071900 , TraesCS6D02G097200 , TraesCS3D02G163600 , TraesCS3B02G502200 , TraesCS3A02G072000 , TraesCS3D02G453400
Populus -


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cDNA sequences
Sobic.006G225800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G251600 exosome complex exonuclease rrp4, putative, expressed K03679: RRP4, exosome complex component RRP4
2 Sobic.004G305100 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
3 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
4 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
5 Sobic.002G365400 PPR repeat domain containing protein, putative, expressed -
6 Sobic.003G098900 - -
7 Sobic.010G041000 OsLonP2 - Putative Lon protease homologue, expressed K04485: radA, DNA repair protein RadA/Sms
8 Sobic.002G146900 - -
9 Sobic.004G173100 exosome complex exonuclease, putative, expressed K03678: RRP45, exosome complex component RRP45
10 Sobic.004G277400 glucosyltransferase, putative, expressed K03849: alpha-1,3-glucosyltransferase
11 Sobic.003G235700 single-stranded DNA-binding protein, putative, expressed K03111: single-strand DNA-binding protein
12 Sobic.004G016300 PPR repeat containing protein, expressed -
13 Sobic.001G157300 expressed protein K14793: ribosomal RNA-processing protein 9
14 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
15 Sobic.009G163600 exosome complex exonuclease, putative, expressed K11600: RRP41, EXOSC4, exosome complex component RRP41
16 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
17 Sobic.006G084000 CDK5RAP1, putative, expressed K15865: threonylcarbamoyladenosine tRNA methylthiotransferase CDKAL1
18 Sobic.003G199700 mTERF family protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.003G098200 expressed protein -
20 Sobic.006G208400 expressed protein K14318: nuclear pore complex protein Nup88


Gene co-expression network
sample Sobic006G225800 Sobic006G225800 Sobic006G251600 Sobic006G251600 Sobic006G225800--Sobic006G251600 Sobic004G305100 Sobic004G305100 Sobic006G225800--Sobic004G305100 Sobic004G287100 Sobic004G287100 Sobic006G225800--Sobic004G287100 Sobic002G262100 Sobic002G262100 Sobic006G225800--Sobic002G262100 Sobic002G365400 Sobic002G365400 Sobic006G225800--Sobic002G365400 Sobic003G098900 Sobic003G098900 Sobic006G225800--Sobic003G098900 Sobic010G041000 Sobic010G041000 Sobic006G225800--Sobic010G041000 Sobic002G146900 Sobic002G146900 Sobic006G225800--Sobic002G146900 Sobic004G173100 Sobic004G173100 Sobic006G225800--Sobic004G173100 Sobic009G071700 Sobic009G071700 Sobic006G251600--Sobic009G071700 Sobic002G365900 Sobic002G365900 Sobic006G251600--Sobic002G365900 Sobic006G225400 Sobic006G225400 Sobic006G251600--Sobic006G225400 Sobic001G008500 Sobic001G008500 Sobic006G251600--Sobic001G008500 Sobic008G083400 Sobic008G083400 Sobic006G251600--Sobic008G083400 Sobic006G198600 Sobic006G198600 Sobic006G251600--Sobic006G198600 Sobic010G205900 Sobic010G205900 Sobic006G251600--Sobic010G205900 Sobic006G251600--Sobic004G173100 Sobic001G371100 Sobic001G371100 Sobic006G251600--Sobic001G371100 Sobic004G305100--Sobic003G098900 Sobic004G305100--Sobic010G041000 Sobic001G502600 Sobic001G502600 Sobic004G305100--Sobic001G502600 Sobic006G125900 Sobic006G125900 Sobic004G305100--Sobic006G125900 Sobic006G231400 Sobic006G231400 Sobic004G305100--Sobic006G231400 Sobic002G318800 Sobic002G318800 Sobic004G305100--Sobic002G318800 Sobic010G215900 Sobic010G215900 Sobic004G305100--Sobic010G215900 Sobic009G163600 Sobic009G163600 Sobic004G305100--Sobic009G163600 Sobic006G140400 Sobic006G140400 Sobic004G305100--Sobic006G140400 Sobic007G209600 Sobic007G209600 Sobic004G287100--Sobic007G209600 Sobic005G120700 Sobic005G120700 Sobic004G287100--Sobic005G120700 Sobic001G061800 Sobic001G061800 Sobic004G287100--Sobic001G061800 Sobic001G033000 Sobic001G033000 Sobic004G287100--Sobic001G033000 Sobic002G318600 Sobic002G318600 Sobic004G287100--Sobic002G318600 Sobic001G210000 Sobic001G210000 Sobic004G287100--Sobic001G210000 Sobic002G430900 Sobic002G430900 Sobic004G287100--Sobic002G430900 Sobic010G250800 Sobic010G250800 Sobic004G287100--Sobic010G250800 Sobic001G122100 Sobic001G122100 Sobic004G287100--Sobic001G122100 Sobic001G119600 Sobic001G119600 Sobic002G262100--Sobic001G119600 Sobic002G399200 Sobic002G399200 Sobic002G262100--Sobic002G399200 Sobic002G378100 Sobic002G378100 Sobic002G262100--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic002G262100--Sobic008G163500 Sobic001G422500 Sobic001G422500 Sobic002G262100--Sobic001G422500 Sobic001G157300 Sobic001G157300 Sobic002G262100--Sobic001G157300 Sobic002G262100--Sobic004G173100 Sobic003G425100 Sobic003G425100 Sobic002G262100--Sobic003G425100 Sobic002G262100--Sobic006G198600 Sobic004G016300 Sobic004G016300 Sobic002G365400--Sobic004G016300 Sobic003G098200 Sobic003G098200 Sobic002G365400--Sobic003G098200 Sobic003G051500 Sobic003G051500 Sobic002G365400--Sobic003G051500 Sobic001G099200 Sobic001G099200 Sobic002G365400--Sobic001G099200 Sobic002G365400--Sobic006G225800 Sobic010G004400 Sobic010G004400 Sobic002G365400--Sobic010G004400 Sobic001G395300 Sobic001G395300 Sobic002G365400--Sobic001G395300 Sobic010G099300 Sobic010G099300 Sobic002G365400--Sobic010G099300 Sobic001G392100 Sobic001G392100 Sobic002G365400--Sobic001G392100 Sobic003G098900--Sobic004G305100 Sobic003G098900--Sobic010G041000 Sobic004G111000 Sobic004G111000 Sobic003G098900--Sobic004G111000 Sobic002G394800 Sobic002G394800 Sobic003G098900--Sobic002G394800 Sobic004G285000 Sobic004G285000 Sobic003G098900--Sobic004G285000 Sobic003G098900--Sobic010G215900 Sobic003G361400 Sobic003G361400 Sobic003G098900--Sobic003G361400 Sobic003G436600 Sobic003G436600 Sobic003G098900--Sobic003G436600 Sobic002G177500 Sobic002G177500 Sobic003G098900--Sobic002G177500 Sobic010G041000--Sobic004G305100 Sobic010G041000--Sobic004G111000 Sobic010G041000--Sobic003G098900 Sobic001G008000 Sobic001G008000 Sobic010G041000--Sobic001G008000 Sobic010G041000--Sobic003G361400 Sobic010G041000--Sobic001G502600 Sobic002G110500 Sobic002G110500 Sobic010G041000--Sobic002G110500 Sobic004G038100 Sobic004G038100 Sobic010G041000--Sobic004G038100 Sobic007G059700 Sobic007G059700 Sobic010G041000--Sobic007G059700 Sobic002G107532 Sobic002G107532 Sobic002G146900--Sobic002G107532 Sobic007G112700 Sobic007G112700 Sobic002G146900--Sobic007G112700 Sobic002G136900 Sobic002G136900 Sobic002G146900--Sobic002G136900 Sobic002G182150 Sobic002G182150 Sobic002G146900--Sobic002G182150 Sobic005G099200 Sobic005G099200 Sobic002G146900--Sobic005G099200 Sobic002G146900--Sobic006G225800 Sobic007G100100 Sobic007G100100 Sobic002G146900--Sobic007G100100 Sobic002G175900 Sobic002G175900 Sobic002G146900--Sobic002G175900 Sobic008G109100 Sobic008G109100 Sobic002G146900--Sobic008G109100 Sobic004G173100--Sobic009G071700 Sobic004G173100--Sobic006G251600 Sobic004G173100--Sobic003G425100 Sobic004G173100--Sobic002G262100 Sobic004G173100--Sobic006G198600 Sobic004G173100--Sobic002G399200 Sobic003G407600 Sobic003G407600 Sobic004G173100--Sobic003G407600 Sobic005G100900 Sobic005G100900 Sobic004G173100--Sobic005G100900 Sobic004G173100--Sobic008G163500
Octagon: transcription factors


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