Gene annotation
Transcriptome id Sobic.001G165100.5,Sobic.001G165100.12,Sobic.001G165100.7,Sobic.001G165100.6,Sobic.001G165100.2,Sobic.001G165100.3,Sobic.001G165100.13,Sobic.001G165100.8,Sobic.001G165100.10,Sobic.001G165100.11,Sobic.001G165100.9,Sobic.001G165100.1
Synonym REM39, VRN1, Sb01g014410
Functional annotation B3 DNA binding domain containing protein
UniProt A0A1Z5S5Y9 , A0A1Z5S692 , A0A1Z5S5Y1 , A0A1B6QJA6 , A0A1Z5S5Y0 , A0A1Z5S5Y3 , A0A1B6QJA2 , A0A1Z5S5X6 , A0A1B6QJA9
Pfam PF02362
Panther DB PTHR31920 PTHR31920:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT4G33280 : AP2/B3-like transcriptional factor family protein
RAP-DB (Rice) LOC_Os03g42410.1,LOC_Os03g42370.1 : B3 DNA binding domain containing protein, expressed,B3 DNA binding domain containing protein
MaizeGDB (Corn) Zm00025a007393
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G057800 kelch repeat-containing protein, putative, expressed -
2 Sobic.008G022200 RNA-binding zinc finger protein, putative, expressed -
3 Sobic.006G142500 protein kinase, putative, expressed -
4 Sobic.003G072500 transcription factor X1, putative, expressed -
5 Sobic.009G047000 E3 ubiquitin-protein ligase SINA-like 2, putative, expressed K04506: E3 ubiquitin-protein ligase SIAH1
6 Sobic.006G274200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Eukaryotic aspartyl protease domain containing protein, expressed -
7 Sobic.003G002000 expressed protein -
8 Sobic.003G055600 expressed protein -
9 Sobic.008G151600 PMR5, putative, expressed -
10 Sobic.006G211900 Cinnamyl alcohol dehydrogenase(PubMedID : 28606901)@Cinnamyl alcohol dehydrogenase(PubMedID : 19087955)@dehydrogenase, putative, expressed K00083: cinnamyl-alcohol dehydrogenase
11 Sobic.003G019900 GDSL-like lipase/acylhydrolase, putative, expressed -
12 Sobic.001G390400 expressed protein -
13 Sobic.010G269700 expressed protein -
14 Sobic.006G093200 PHD finger protein, putative, expressed -
15 Sobic.009G216500 expressed protein -
16 Sobic.002G050700 tesmin/TSO1-like CXC domain containing protein, expressed -
17 Sobic.004G267600 OsFBT4 - F-box and tubby domain containing protein, expressed -
18 Sobic.002G317700 BNR/Asp-box repeat family protein, putative, expressed -
19 Sobic.002G279400 DUF630/DUF632 domains containing protein, putative, expressed -
20 Sobic.007G201900 expressed protein -


Gene co-expression network
sample Sobic001G165100 Sobic001G165100 Sobic009G057800 Sobic009G057800 Sobic001G165100--Sobic009G057800 Sobic008G022200 Sobic008G022200 Sobic001G165100--Sobic008G022200 Sobic006G142500 Sobic006G142500 Sobic001G165100--Sobic006G142500 Sobic003G072500 Sobic003G072500 Sobic001G165100--Sobic003G072500 Sobic009G047000 Sobic009G047000 Sobic001G165100--Sobic009G047000 Sobic006G274200 Sobic006G274200 Sobic001G165100--Sobic006G274200 Sobic003G002000 Sobic003G002000 Sobic001G165100--Sobic003G002000 Sobic003G055600 Sobic003G055600 Sobic001G165100--Sobic003G055600 Sobic008G151600 Sobic008G151600 Sobic001G165100--Sobic008G151600 Sobic007G201900 Sobic007G201900 Sobic009G057800--Sobic007G201900 Sobic002G112000 Sobic002G112000 Sobic009G057800--Sobic002G112000 Sobic001G101700 Sobic001G101700 Sobic009G057800--Sobic001G101700 Sobic002G279400 Sobic002G279400 Sobic009G057800--Sobic002G279400 Sobic009G057800--Sobic008G151600 Sobic007G209200 Sobic007G209200 Sobic009G057800--Sobic007G209200 Sobic010G255000 Sobic010G255000 Sobic009G057800--Sobic010G255000 Sobic009G143200 Sobic009G143200 Sobic009G057800--Sobic009G143200 Sobic003G282500 Sobic003G282500 Sobic009G057800--Sobic003G282500 Sobic008G022200--Sobic009G047000 Sobic008G022200--Sobic006G142500 Sobic005G018050 Sobic005G018050 Sobic008G022200--Sobic005G018050 Sobic009G127800 Sobic009G127800 Sobic008G022200--Sobic009G127800 Sobic006G272800 Sobic006G272800 Sobic008G022200--Sobic006G272800 Sobic009G225500 Sobic009G225500 Sobic008G022200--Sobic009G225500 Sobic006G278000 Sobic006G278000 Sobic008G022200--Sobic006G278000 Sobic010G275800 Sobic010G275800 Sobic008G022200--Sobic010G275800 Sobic002G284100 Sobic002G284100 Sobic008G022200--Sobic002G284100 Sobic010G086000 Sobic010G086000 Sobic006G142500--Sobic010G086000 Sobic004G267600 Sobic004G267600 Sobic006G142500--Sobic004G267600 Sobic010G192500 Sobic010G192500 Sobic006G142500--Sobic010G192500 Sobic006G142500--Sobic009G225500 Sobic003G032200 Sobic003G032200 Sobic006G142500--Sobic003G032200 Sobic004G234500 Sobic004G234500 Sobic006G142500--Sobic004G234500 Sobic006G142500--Sobic009G127800 Sobic006G142500--Sobic009G047000 Sobic001G390400 Sobic001G390400 Sobic006G142500--Sobic001G390400 Sobic008G070700 Sobic008G070700 Sobic003G072500--Sobic008G070700 Sobic003G393100 Sobic003G393100 Sobic003G072500--Sobic003G393100 Sobic003G072500--Sobic009G057800 Sobic003G072500--Sobic002G112000 Sobic001G175100 Sobic001G175100 Sobic003G072500--Sobic001G175100 Sobic006G106200 Sobic006G106200 Sobic003G072500--Sobic006G106200 Sobic002G317700 Sobic002G317700 Sobic003G072500--Sobic002G317700 Sobic007G161600 Sobic007G161600 Sobic003G072500--Sobic007G161600 Sobic003G129500 Sobic003G129500 Sobic003G072500--Sobic003G129500 Sobic009G047000--Sobic006G142500 Sobic009G047000--Sobic004G267600 Sobic009G047000--Sobic010G192500 Sobic004G179800 Sobic004G179800 Sobic009G047000--Sobic004G179800 Sobic009G047000--Sobic010G086000 Sobic002G417000 Sobic002G417000 Sobic009G047000--Sobic002G417000 Sobic010G024500 Sobic010G024500 Sobic009G047000--Sobic010G024500 Sobic009G202801 Sobic009G202801 Sobic009G047000--Sobic009G202801 Sobic003G292700 Sobic003G292700 Sobic009G047000--Sobic003G292700 Sobic003G019900 Sobic003G019900 Sobic006G274200--Sobic003G019900 Sobic010G269700 Sobic010G269700 Sobic006G274200--Sobic010G269700 Sobic006G274200--Sobic003G002000 Sobic006G274200--Sobic007G209200 Sobic001G101900 Sobic001G101900 Sobic006G274200--Sobic001G101900 Sobic006G274200--Sobic008G151600 Sobic009G146700 Sobic009G146700 Sobic006G274200--Sobic009G146700 Sobic003G338700 Sobic003G338700 Sobic006G274200--Sobic003G338700 Sobic001G493900 Sobic001G493900 Sobic006G274200--Sobic001G493900 Sobic003G002000--Sobic006G274200 Sobic003G002000--Sobic007G209200 Sobic006G163300 Sobic006G163300 Sobic003G002000--Sobic006G163300 Sobic003G002000--Sobic003G019900 Sobic003G010700 Sobic003G010700 Sobic003G002000--Sobic003G010700 Sobic003G002000--Sobic001G101900 Sobic008G138000 Sobic008G138000 Sobic003G002000--Sobic008G138000 Sobic003G002000--Sobic010G269700 Sobic007G147200 Sobic007G147200 Sobic003G002000--Sobic007G147200 Sobic001G377700 Sobic001G377700 Sobic003G055600--Sobic001G377700 Sobic005G157300 Sobic005G157300 Sobic003G055600--Sobic005G157300 Sobic003G055600--Sobic009G143200 Sobic003G183700 Sobic003G183700 Sobic003G055600--Sobic003G183700 Sobic004G321400 Sobic004G321400 Sobic003G055600--Sobic004G321400 Sobic009G172950 Sobic009G172950 Sobic003G055600--Sobic009G172950 Sobic002G021200 Sobic002G021200 Sobic003G055600--Sobic002G021200 Sobic005G110535 Sobic005G110535 Sobic003G055600--Sobic005G110535 Sobic007G007800 Sobic007G007800 Sobic003G055600--Sobic007G007800 Sobic008G151600--Sobic003G019900 Sobic006G221800 Sobic006G221800 Sobic008G151600--Sobic006G221800 Sobic008G151600--Sobic006G274200 Sobic008G151600--Sobic001G493900 Sobic008G151600--Sobic001G101700 Sobic010G077000 Sobic010G077000 Sobic008G151600--Sobic010G077000 Sobic008G151600--Sobic007G161600 Sobic005G032600 Sobic005G032600 Sobic008G151600--Sobic005G032600 Sobic008G151600--Sobic007G147200
Octagon: transcription factors


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