Gene annotation
Transcriptome id Sobic.001G251500.1
Synonym Sb01g022210
Functional annotation calmodulin-binding protein, putative, expressed
UniProt C5WM63
Pfam -
Panther DB PTHR31250 PTHR31250:SF11
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G58480 : calmodulin-binding family protein
RAP-DB (Rice) LOC_Os10g27170.1 : calmodulin-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a006981
Brachypodium PNT67373 , PNT67372 , PNT67374 , KQJ96648 , KQK23459
Barley -
Wheat TraesCS5B02G377900 , TraesCS5A02G375700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G352700 methionine adenosyltransferase regulatory beta subunit-related, putative, expressed -
2 Sobic.002G176900 proton pump interactor, putative, expressed -
3 Sobic.010G217001 - -
4 Sobic.009G027550 - -
5 Sobic.001G492900 calmodulin-binding protein, putative, expressed -
6 Sobic.002G231400 - -
7 Sobic.004G306700 peptidyl-prolyl cis-trans isomerase CYP40, putative, expressed K05864: PPID, peptidyl-prolyl isomerase D
8 Sobic.001G316500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@hydrolase, alpha/beta fold family domain containing protein, expressed -
9 Sobic.002G208900 glutamate receptor, putative, expressed K05387: glutamate receptor, ionotropic, plant
10 Sobic.001G010200 expressed protein -
11 Sobic.006G243000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@CCB4, putative, expressed -
12 Sobic.002G018133 - -
13 Sobic.002G395900 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@nodulation protein-related, putative, expressed -
14 Sobic.001G018550 - -
15 Sobic.002G049500 LTPL77 - Protease inhibitor/seed storage/LTP family protein precursor, putative, expressed -
16 Sobic.009G118700 cytokinin dehydrogenase precursor, putative, expressed K00279: cytokinin dehydrogenase
17 Sobic.009G045100 proline synthetase co-transcribed bacterial homolog protein, putative, expressed K06997: yggS, PLP dependent protein
18 Sobic.001G519200 expressed protein -
19 Sobic.004G047001 - -
20 Sobic.001G388800 tRNA-specific adenosine deaminase 2, putative, expressed K15441: TAD2, tRNA-specific adenosine deaminase 2


Gene co-expression network
sample Sobic001G251500 Sobic001G251500 Sobic004G352700 Sobic004G352700 Sobic001G251500--Sobic004G352700 Sobic002G176900 Sobic002G176900 Sobic001G251500--Sobic002G176900 Sobic010G217001 Sobic010G217001 Sobic001G251500--Sobic010G217001 Sobic009G027550 Sobic009G027550 Sobic001G251500--Sobic009G027550 Sobic001G492900 Sobic001G492900 Sobic001G251500--Sobic001G492900 Sobic002G231400 Sobic002G231400 Sobic001G251500--Sobic002G231400 Sobic004G306700 Sobic004G306700 Sobic001G251500--Sobic004G306700 Sobic001G316500 Sobic001G316500 Sobic001G251500--Sobic001G316500 Sobic002G208900 Sobic002G208900 Sobic001G251500--Sobic002G208900 Sobic004G352700--Sobic001G251500 Sobic002G196900 Sobic002G196900 Sobic004G352700--Sobic002G196900 Sobic004G352700--Sobic002G208900 Sobic007G081400 Sobic007G081400 Sobic004G352700--Sobic007G081400 Sobic001G093732 Sobic001G093732 Sobic004G352700--Sobic001G093732 Sobic004G273500 Sobic004G273500 Sobic004G352700--Sobic004G273500 Sobic005G031100 Sobic005G031100 Sobic004G352700--Sobic005G031100 Sobic004G352700--Sobic010G217001 Sobic006G008500 Sobic006G008500 Sobic004G352700--Sobic006G008500 Sobic010G266100 Sobic010G266100 Sobic002G176900--Sobic010G266100 Sobic002G176900--Sobic001G251500 Sobic005G023100 Sobic005G023100 Sobic002G176900--Sobic005G023100 Sobic003G374400 Sobic003G374400 Sobic002G176900--Sobic003G374400 Sobic006G218100 Sobic006G218100 Sobic002G176900--Sobic006G218100 Sobic007G213200 Sobic007G213200 Sobic002G176900--Sobic007G213200 Sobic003G002900 Sobic003G002900 Sobic002G176900--Sobic003G002900 Sobic005G138900 Sobic005G138900 Sobic002G176900--Sobic005G138900 Sobic001G536200 Sobic001G536200 Sobic002G176900--Sobic001G536200 Sobic002G018133 Sobic002G018133 Sobic010G217001--Sobic002G018133 Sobic010G217001--Sobic007G081400 Sobic010G217001--Sobic002G231400 Sobic002G030001 Sobic002G030001 Sobic010G217001--Sobic002G030001 Sobic005G083866 Sobic005G083866 Sobic010G217001--Sobic005G083866 Sobic004G288900 Sobic004G288900 Sobic010G217001--Sobic004G288900 Sobic003G043650 Sobic003G043650 Sobic010G217001--Sobic003G043650 Sobic002G138200 Sobic002G138200 Sobic010G217001--Sobic002G138200 Sobic010G217001--Sobic001G316500 Sobic001G027400 Sobic001G027400 Sobic009G027550--Sobic001G027400 Sobic010G097800 Sobic010G097800 Sobic009G027550--Sobic010G097800 Sobic002G161200 Sobic002G161200 Sobic009G027550--Sobic002G161200 Sobic009G242032 Sobic009G242032 Sobic009G027550--Sobic009G242032 Sobic003G304900 Sobic003G304900 Sobic009G027550--Sobic003G304900 Sobic005G230700 Sobic005G230700 Sobic009G027550--Sobic005G230700 Sobic007G157200 Sobic007G157200 Sobic009G027550--Sobic007G157200 Sobic002G202200 Sobic002G202200 Sobic009G027550--Sobic002G202200 Sobic007G124800 Sobic007G124800 Sobic009G027550--Sobic007G124800 Sobic002G049500 Sobic002G049500 Sobic001G492900--Sobic002G049500 Sobic001G492900--Sobic001G251500 Sobic006G178700 Sobic006G178700 Sobic001G492900--Sobic006G178700 Sobic001G492900--Sobic009G242032 Sobic004G093000 Sobic004G093000 Sobic001G492900--Sobic004G093000 Sobic005G024300 Sobic005G024300 Sobic001G492900--Sobic005G024300 Sobic010G078800 Sobic010G078800 Sobic001G492900--Sobic010G078800 Sobic010G172100 Sobic010G172100 Sobic001G492900--Sobic010G172100 Sobic001G174300 Sobic001G174300 Sobic001G492900--Sobic001G174300 Sobic001G018550 Sobic001G018550 Sobic002G231400--Sobic001G018550 Sobic003G241600 Sobic003G241600 Sobic002G231400--Sobic003G241600 Sobic003G429600 Sobic003G429600 Sobic002G231400--Sobic003G429600 Sobic005G096201 Sobic005G096201 Sobic002G231400--Sobic005G096201 Sobic004G200000 Sobic004G200000 Sobic002G231400--Sobic004G200000 Sobic002G231400--Sobic003G043650 Sobic002G209450 Sobic002G209450 Sobic002G231400--Sobic002G209450 Sobic002G231400--Sobic010G217001 Sobic003G305250 Sobic003G305250 Sobic002G231400--Sobic003G305250 Sobic001G507700 Sobic001G507700 Sobic004G306700--Sobic001G507700 Sobic004G306700--Sobic001G316500 Sobic001G312801 Sobic001G312801 Sobic004G306700--Sobic001G312801 Sobic009G252600 Sobic009G252600 Sobic004G306700--Sobic009G252600 Sobic004G306700--Sobic001G027400 Sobic002G387000 Sobic002G387000 Sobic004G306700--Sobic002G387000 Sobic004G306700--Sobic010G217001 Sobic008G007100 Sobic008G007100 Sobic004G306700--Sobic008G007100 Sobic004G306700--Sobic007G124800 Sobic001G316500--Sobic007G124800 Sobic001G316500--Sobic003G304900 Sobic001G316500--Sobic010G217001 Sobic001G316500--Sobic004G306700 Sobic001G316500--Sobic001G174300 Sobic008G007200 Sobic008G007200 Sobic001G316500--Sobic008G007200 Sobic010G059900 Sobic010G059900 Sobic001G316500--Sobic010G059900 Sobic001G316500--Sobic002G202200 Sobic001G316500--Sobic001G027400 Sobic006G215650 Sobic006G215650 Sobic002G208900--Sobic006G215650 Sobic008G169500 Sobic008G169500 Sobic002G208900--Sobic008G169500 Sobic004G118300 Sobic004G118300 Sobic002G208900--Sobic004G118300 Sobic001G150100 Sobic001G150100 Sobic002G208900--Sobic001G150100 Sobic007G038200 Sobic007G038200 Sobic002G208900--Sobic007G038200 Sobic002G129900 Sobic002G129900 Sobic002G208900--Sobic002G129900 Sobic002G208700 Sobic002G208700 Sobic002G208900--Sobic002G208700 Sobic006G280250 Sobic006G280250 Sobic002G208900--Sobic006G280250 Sobic006G000200 Sobic006G000200 Sobic002G208900--Sobic006G000200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.