Gene annotation
Transcriptome id Sobic.001G283000.1
Synonym Sb01g027840,PLGG
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
- (PubMedID : 26976818)
lrgB-like family protein, expressed
UniProt C5WQN5
Pfam PF04172
Panther DB PTHR30249 PTHR30249:SF0
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G32080 : membrane protein, putative
RAP-DB (Rice) LOC_Os10g42780.1 : lrgB-like family protein, expressed
MaizeGDB (Corn) Zm00025a003558 , Zm00025a003556
Brachypodium KQJ97989
Barley HORVU1Hr1G051150.22 , HORVU1Hr1G051150.20 , HORVU1Hr1G051150.21 , HORVU1Hr1G051160.2 , HORVU1Hr1G051160.1 , HORVU1Hr1G051160.4 , HORVU1Hr1G051160.5 , HORVU1Hr1G051150.1 , HORVU1Hr1G051150.7 , HORVU1Hr1G051150.5 , HORVU1Hr1G051150.8 , HORVU1Hr1G051150.13 , HORVU1Hr1G051150.12 , HORVU1Hr1G051150.11 , HORVU1Hr1G051150.10 , HORVU1Hr1G051150.17 , HORVU1Hr1G051150.16 , HORVU1Hr1G051150.15 , HORVU1Hr1G051150.14 , HORVU1Hr1G051150.18
Wheat TraesCS1A02G196500 , TraesCS1D02G200000 , TraesCS1B02G211100
Populus PNT44722


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G037301 - -
2 Sobic.003G374500 pentatricopeptide repeat domain containing protein, putative, expressed -
3 Sobic.006G051700 WRKY123, expressed -
4 Sobic.001G287101 - -
5 Sobic.001G186850 - -
6 Sobic.004G088450 - K17302: COPB2, coatomer subunit beta'
7 Sobic.002G034100 D-alanine--D-alanine ligase family, putative, expressed -
8 Sobic.005G104400 - -
9 Sobic.002G110300 Up-reguralion under heat(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@UBX domain-containing protein, putative, expressed -
10 Sobic.001G262700 hhH-GPD superfamily base excision DNA repair protein, putative, expressed -
11 Sobic.007G020600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@MATE efflux protein, putative, expressed -
12 Sobic.004G092100 - -
13 Sobic.006G251000 STE_MEKK_ste11_MAP3K.1 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
14 Sobic.001G239300 AT hook motif domain containing protein, expressed -
15 Sobic.008G031300 nucleotidyltransferase, putative, expressed -
16 Sobic.005G061601 - -
17 Sobic.005G182000 - -
18 Sobic.002G400200 CS domain containing protein, putative, expressed -
19 Sobic.001G101100 mitochondrial carrier protein, putative, expressed K15115: SLC25A32, solute carrier family 25 (mitochondrial folate transporter), member 32
20 Sobic.006G057733 - -


Gene co-expression network
sample Sobic001G283000 Sobic001G283000 Sobic007G037301 Sobic007G037301 Sobic001G283000--Sobic007G037301 Sobic003G374500 Sobic003G374500 Sobic001G283000--Sobic003G374500 Sobic006G051700 Sobic006G051700 Sobic001G283000--Sobic006G051700 Sobic001G287101 Sobic001G287101 Sobic001G283000--Sobic001G287101 Sobic001G186850 Sobic001G186850 Sobic001G283000--Sobic001G186850 Sobic004G088450 Sobic004G088450 Sobic001G283000--Sobic004G088450 Sobic002G034100 Sobic002G034100 Sobic001G283000--Sobic002G034100 Sobic005G104400 Sobic005G104400 Sobic001G283000--Sobic005G104400 Sobic002G110300 Sobic002G110300 Sobic001G283000--Sobic002G110300 Sobic010G089100 Sobic010G089100 Sobic007G037301--Sobic010G089100 Sobic002G224450 Sobic002G224450 Sobic007G037301--Sobic002G224450 Sobic007G037301--Sobic003G374500 Sobic003G366850 Sobic003G366850 Sobic007G037301--Sobic003G366850 Sobic007G037301--Sobic001G287101 Sobic007G037301--Sobic002G110300 Sobic001G262900 Sobic001G262900 Sobic007G037301--Sobic001G262900 Sobic003G429500 Sobic003G429500 Sobic007G037301--Sobic003G429500 Sobic002G400900 Sobic002G400900 Sobic007G037301--Sobic002G400900 Sobic008G065400 Sobic008G065400 Sobic003G374500--Sobic008G065400 Sobic001G278600 Sobic001G278600 Sobic003G374500--Sobic001G278600 Sobic003G374500--Sobic003G366850 Sobic003G374500--Sobic007G037301 Sobic005G079700 Sobic005G079700 Sobic003G374500--Sobic005G079700 Sobic001G140200 Sobic001G140200 Sobic003G374500--Sobic001G140200 Sobic003G374500--Sobic001G262900 Sobic003G266700 Sobic003G266700 Sobic003G374500--Sobic003G266700 Sobic002G431200 Sobic002G431200 Sobic003G374500--Sobic002G431200 Sobic004G267300 Sobic004G267300 Sobic006G051700--Sobic004G267300 Sobic006G051700--Sobic010G089100 Sobic005G019200 Sobic005G019200 Sobic006G051700--Sobic005G019200 Sobic003G056100 Sobic003G056100 Sobic006G051700--Sobic003G056100 Sobic001G474600 Sobic001G474600 Sobic006G051700--Sobic001G474600 Sobic004G010800 Sobic004G010800 Sobic006G051700--Sobic004G010800 Sobic005G019600 Sobic005G019600 Sobic006G051700--Sobic005G019600 Sobic001G388250 Sobic001G388250 Sobic006G051700--Sobic001G388250 Sobic007G186900 Sobic007G186900 Sobic006G051700--Sobic007G186900 Sobic001G287101--Sobic002G224450 Sobic004G121000 Sobic004G121000 Sobic001G287101--Sobic004G121000 Sobic001G287101--Sobic002G400900 Sobic008G025900 Sobic008G025900 Sobic001G287101--Sobic008G025900 Sobic001G240400 Sobic001G240400 Sobic001G287101--Sobic001G240400 Sobic005G110427 Sobic005G110427 Sobic001G287101--Sobic005G110427 Sobic004G132150 Sobic004G132150 Sobic001G287101--Sobic004G132150 Sobic001G287101--Sobic003G366850 Sobic003G436900 Sobic003G436900 Sobic001G287101--Sobic003G436900 Sobic003G439501 Sobic003G439501 Sobic001G186850--Sobic003G439501 Sobic007G010000 Sobic007G010000 Sobic001G186850--Sobic007G010000 Sobic005G096700 Sobic005G096700 Sobic001G186850--Sobic005G096700 Sobic001G186850--Sobic001G283000 Sobic002G363000 Sobic002G363000 Sobic001G186850--Sobic002G363000 Sobic003G036500 Sobic003G036500 Sobic001G186850--Sobic003G036500 Sobic002G400300 Sobic002G400300 Sobic001G186850--Sobic002G400300 Sobic004G305200 Sobic004G305200 Sobic001G186850--Sobic004G305200 Sobic004G351100 Sobic004G351100 Sobic001G186850--Sobic004G351100 Sobic004G088501 Sobic004G088501 Sobic004G088450--Sobic004G088501 Sobic004G004300 Sobic004G004300 Sobic004G088450--Sobic004G004300 Sobic001G281100 Sobic001G281100 Sobic004G088450--Sobic001G281100 Sobic004G358400 Sobic004G358400 Sobic004G088450--Sobic004G358400 Sobic004G088450--Sobic004G351100 Sobic001G251200 Sobic001G251200 Sobic004G088450--Sobic001G251200 Sobic003G252100 Sobic003G252100 Sobic004G088450--Sobic003G252100 Sobic001G441400 Sobic001G441400 Sobic004G088450--Sobic001G441400 Sobic003G427600 Sobic003G427600 Sobic004G088450--Sobic003G427600 Sobic004G023000 Sobic004G023000 Sobic002G034100--Sobic004G023000 Sobic001G100900 Sobic001G100900 Sobic002G034100--Sobic001G100900 Sobic009G161550 Sobic009G161550 Sobic002G034100--Sobic009G161550 Sobic004G263600 Sobic004G263600 Sobic002G034100--Sobic004G263600 Sobic004G091100 Sobic004G091100 Sobic002G034100--Sobic004G091100 Sobic005G110200 Sobic005G110200 Sobic002G034100--Sobic005G110200 Sobic004G174200 Sobic004G174200 Sobic002G034100--Sobic004G174200 Sobic005G090401 Sobic005G090401 Sobic002G034100--Sobic005G090401 Sobic010G141800 Sobic010G141800 Sobic002G034100--Sobic010G141800 Sobic001G262700 Sobic001G262700 Sobic005G104400--Sobic001G262700 Sobic010G025300 Sobic010G025300 Sobic005G104400--Sobic010G025300 Sobic010G223700 Sobic010G223700 Sobic005G104400--Sobic010G223700 Sobic002G400200 Sobic002G400200 Sobic005G104400--Sobic002G400200 Sobic005G104400--Sobic010G089100 Sobic009G167600 Sobic009G167600 Sobic005G104400--Sobic009G167600 Sobic005G104400--Sobic004G091100 Sobic007G020600 Sobic007G020600 Sobic005G104400--Sobic007G020600 Sobic002G427050 Sobic002G427050 Sobic005G104400--Sobic002G427050 Sobic002G110300--Sobic007G037301 Sobic001G095500 Sobic001G095500 Sobic002G110300--Sobic001G095500 Sobic009G183000 Sobic009G183000 Sobic002G110300--Sobic009G183000 Sobic002G110300--Sobic010G089100 Sobic001G083800 Sobic001G083800 Sobic002G110300--Sobic001G083800 Sobic004G226600 Sobic004G226600 Sobic002G110300--Sobic004G226600 Sobic003G119800 Sobic003G119800 Sobic002G110300--Sobic003G119800 Sobic007G006900 Sobic007G006900 Sobic002G110300--Sobic007G006900 Sobic002G134600 Sobic002G134600 Sobic002G110300--Sobic002G134600
Octagon: transcription factors


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